ChromExtractParams Struct Reference

ChromatogramExtractor parameters. More...

#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h>

Public Attributes
double	min_upper_edge_dist
	Whether to not extract anything closer than this (in Da) from the upper edge. More...
double	mz_extraction_window
	Extraction window in Da or ppm (e.g. 50ppm means extraction +/- 25ppm) More...
bool	ppm
	Whether the extraction window is given in ppm or Da. More...
String	extraction_function
	The extraction function in mass space. More...
double	rt_extraction_window
	The retention time extraction window. More...
double	extra_rt_extract
	Whether to extract some extra in the retention time (can be useful if one wants to look at the chromatogram outside the window) More...

Detailed Description

ChromatogramExtractor parameters.

A small helper struct to pass the parameters for the chromatogram extraction through to the actual algorithm.

Member Data Documentation

extra_rt_extract

double extra_rt_extract

Whether to extract some extra in the retention time (can be useful if one wants to look at the chromatogram outside the window)

Referenced by SortPairDoubleByFirst().

extraction_function

String extraction_function

The extraction function in mass space.

Referenced by SortPairDoubleByFirst().

min_upper_edge_dist

double min_upper_edge_dist

Whether to not extract anything closer than this (in Da) from the upper edge.

Referenced by SortPairDoubleByFirst().

mz_extraction_window

double mz_extraction_window

Extraction window in Da or ppm (e.g. 50ppm means extraction +/- 25ppm)

Referenced by SortPairDoubleByFirst().

ppm

bool ppm

Whether the extraction window is given in ppm or Da.

Referenced by SortPairDoubleByFirst().

rt_extraction_window

double rt_extraction_window

The retention time extraction window.

Referenced by OpenSwathWorkflow::OpenSwathWorkflow(), and SortPairDoubleByFirst().