Sets scores to FDRs/qVals in ID data structures to the closest in a given mapping

Sets FDRs/qVals from a scores_to_FDR map in the ID data structures. More...

Functions
template<typename IDType , class ... Args>
static void	setScores_ (const std::map< double, double > &scores_to_FDR, std::vector< IDType > &ids, const std::string &score_type, bool higher_better, Args &&... args)
template<typename IDType >
static String	setScoreType_ (IDType &id, const std::string &score_type, bool higher_better)
template<typename IDType >
static void	setScores_ (const std::map< double, double > &scores_to_FDR, IDType &id, const std::string &score_type, bool higher_better, bool keep_decoy)
template<typename IDType >
static void	setScores_ (const std::map< double, double > &scores_to_FDR, IDType &id, const String &old_score_type)
template<typename IDType >
static void	setScoresHigherWorse_ (const std::map< double, double > &scores_to_FDR, IDType &id, const String &old_score_type)
template<typename IDType , class ... Args>
static void	setScoresAndRemoveDecoys_ (const std::map< double, double > &scores_to_FDR, IDType &id, const String &old_score_type, Args &&... args)
template<typename IDType , class ... Args>
static void	setScoresHigherWorseAndRemoveDecoys_ (const std::map< double, double > &scores_to_FDR, IDType &id, const String &old_score_type, Args &&... args)
template<typename HitType >
static void	setScore_ (const std::map< double, double > &scores_to_FDR, HitType &hit, const std::string &old_score_type)
template<typename HitType >
static void	setScoreHigherWorse_ (const std::map< double, double > &scores_to_FDR, HitType &hit, const std::string &old_score_type)
static void	setScores_ (const std::map< double, double > &scores_to_FDR, PeptideIdentification &id, const std::string &score_type, bool higher_better, bool keep_decoy, int charge)
static void	setScores_ (const std::map< double, double > &scores_to_FDR, PeptideIdentification &id, const std::string &score_type, bool higher_better, bool keep_decoy, int charge, const String &identifier)
template<typename IDType >
static void	setScores_ (const std::map< double, double > &scores_to_FDR, IDType &id, const std::string &score_type, bool higher_better, bool keep_decoy, const String &identifier)
static void	setScores_ (const std::map< double, double > &scores_to_FDR, PeptideIdentification &id, const std::string &score_type, bool higher_better, int charge, const String &identifier)
template<typename IDType >
static void	setScores_ (const std::map< double, double > &scores_to_FDR, IDType &id, const std::string &score_type, bool higher_better, const String &identifier)
template<typename IDType >
static void	setScores_ (const std::map< double, double > &scores_to_FDR, IDType &id, const std::string &score_type, bool higher_better, int charge)
static void	setScores_ (const std::map< double, double > &scores_to_FDR, std::vector< ProteinIdentification::ProteinGroup > &grps, const std::string &score_type, bool higher_better)

Detailed Description

Sets FDRs/qVals from a scores_to_FDR map in the ID data structures.

Parameters

scores_to_FDR	Maps original score to calculated FDR or q-Value
score_type	e.g. FDR or q-Value
higher_better	the new ordering, should usually be false for FDR/qval

Just use the one you need.

Function Documentation

setScore_()

static void setScore_ ( const std::map< double, double > &  scores_to_FDR, HitType &  hit, const std::string &  old_score_type  )

inlinestatic

Referenced by IDScoreGetterSetter::setScores_().

setScoreHigherWorse_()

static void setScoreHigherWorse_ ( const std::map< double, double > &  scores_to_FDR, HitType &  hit, const std::string &  old_score_type  )

inlinestatic

Referenced by IDScoreGetterSetter::setScores_(), and IDScoreGetterSetter::setScoresHigherWorse_().

setScores_() [1/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const std::string &  score_type, bool  higher_better, bool  keep_decoy  )

inlinestatic

References IDScoreGetterSetter::setScores_(), IDScoreGetterSetter::setScoresAndRemoveDecoys_(), IDScoreGetterSetter::setScoresHigherWorse_(), IDScoreGetterSetter::setScoresHigherWorseAndRemoveDecoys_(), and IDScoreGetterSetter::setScoreType_().

setScores_() [2/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const std::string &  score_type, bool  higher_better, bool  keep_decoy, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::setScores_().

setScores_() [3/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const std::string &  score_type, bool  higher_better, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::setScores_().

setScores_() [4/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const std::string &  score_type, bool  higher_better, int  charge  )

inlinestatic

References IDScoreGetterSetter::setScore_(), and IDScoreGetterSetter::setScoreHigherWorse_().

setScores_() [5/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const String &  old_score_type  )

inlinestatic

References IDScoreGetterSetter::setScore_().

setScores_() [6/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, PeptideIdentification &  id, const std::string &  score_type, bool  higher_better, bool  keep_decoy, int  charge  )

inlinestatic

References IDScoreGetterSetter::setScores_(), and IDScoreGetterSetter::setScoreType_().

setScores_() [7/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, PeptideIdentification &  id, const std::string &  score_type, bool  higher_better, bool  keep_decoy, int  charge, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::setScores_().

setScores_() [8/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, PeptideIdentification &  id, const std::string &  score_type, bool  higher_better, int  charge, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::setScores_().

setScores_() [9/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, std::vector< IDType > &  ids, const std::string &  score_type, bool  higher_better, Args &&...  args  )

inlinestatic

Referenced by IDScoreGetterSetter::setPeptideScoresForMap_(), and IDScoreGetterSetter::setScores_().

setScores_() [10/10]

static void setScores_ ( const std::map< double, double > &  scores_to_FDR, std::vector< ProteinIdentification::ProteinGroup > &  grps, const std::string &  score_type, bool  higher_better  )

static

setScoresAndRemoveDecoys_()

static void setScoresAndRemoveDecoys_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const String &  old_score_type, Args &&...  args  )

inlinestatic

References IDScoreGetterSetter::setScoreAndMoveIfTarget_().

Referenced by IDScoreGetterSetter::setScores_().

setScoresHigherWorse_()

static void setScoresHigherWorse_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const String &  old_score_type  )

inlinestatic

References IDScoreGetterSetter::setScoreHigherWorse_().

Referenced by IDScoreGetterSetter::setScores_().

setScoresHigherWorseAndRemoveDecoys_()

static void setScoresHigherWorseAndRemoveDecoys_ ( const std::map< double, double > &  scores_to_FDR, IDType &  id, const String &  old_score_type, Args &&...  args  )

inlinestatic

References IDScoreGetterSetter::setScoreHigherWorseAndMoveIfTarget_().

Referenced by IDScoreGetterSetter::setScores_().

setScoreType_()

static String setScoreType_ ( IDType &  id, const std::string &  score_type, bool  higher_better  )

inlinestatic

Referenced by IDScoreGetterSetter::setScores_().