Here is a list of all class members with links to the classes they belong to:

- h -

• H : ExtendedIsotopeModel , IsotopeModel
• halflogtwopi : GaussFitter::GaussFitResult
• handleBinaryDataArray_() : MzMLSpectrumDecoder
• handleBinaryDataArrayCVParam() : MzMLHandlerHelper
• handleCVParam_() : MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , TraMLHandler
• HandleIterator : MapAlignmentEvaluationAlgorithm
• handlePTMs() : InspectInfile , SequestInfile
• handlePTMs_() : PepNovoInfile
• handleQueryMatch_() : FalseDiscoveryRate
• handler_ : MSDataSqlConsumer , SpectrumAccessSqMass
• handles_ : ConsensusFeature
• HandleSetType : ConsensusFeature
• handleTerm_() : MzDataValidator , MzMLValidator , SemanticValidator
• handleUserParam_() : MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , TraMLHandler
• HARDKLOER : FileTypes
• has() : AASequence , Map< Key, T > , ModificationsDB , String , StringUtils
• has_decoys_ : PepXMLFile
• has_fraction_ : MSstatsFile::MSstatsLine_
• has_H2O_loss : SimpleTSGXLMS::LossIndex , TheoreticalSpectrumGeneratorXLMS::LossIndex
• has_intensity_range_ : FeatureFileOptions , PeakFileOptions
• has_mz_range_ : FeatureFileOptions , PeakFileOptions
• has_NH3_loss : SimpleTSGXLMS::LossIndex , TheoreticalSpectrumGeneratorXLMS::LossIndex
• has_rt_range_ : FeatureFileOptions , PeakFileOptions
• has_uncommited_data_ : ParamEditorDelegate
• has_unit_accession : SemanticValidator::CVTerm
• has_unit_name : SemanticValidator::CVTerm
• has_value : SemanticValidator::CVTerm
• HasActivationMethod() : HasActivationMethod< SpectrumType >
• hasBetterScore() : SimpleSearchEngineAlgorithm::AnnotatedHit_
• hasCharge() : PeptideCompound , TraMLProduct
• hasChromatogram() : MRMTransitionGroup< ChromatogramType, TransitionType >
• hasCNterminalMods_() : MRMDecoy
• hasCompound() : TargetedExperiment
• hasCTerminalModification() : AASequence
• hasCVReference() : CVMappings
• hasCVTerm() : CVTermList , CVTermListInterface
• HasDecoyAnnotation() : IDFilter::HasDecoyAnnotation< HitType >
• hasElement() : ElementDB , EmpiricalFormula
• hasEnzyme() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
• hasError() : MascotRemoteQuery , NetworkGetRequest
• hasFactor() : ExperimentalDesign::SampleSection
• hasFilters() : PeakFileOptions
• hasFivePrimeMod() : NASequence
• hasFollowUpScan : IsobaricChannelExtractor::PuritySate_
• HasGoodScore() : IDFilter::HasGoodScore< HitType >
• hash_type : ConsensusMapMergerAlgorithm , IDMergerAlgorithm
• HashGrid : HashGrid< Cluster >::ConstIterator , HashGrid< Cluster > , HashGrid< Cluster >::Iterator
• hasInferenceData() : ProteinIdentification
• hasInferenceEngineAsSearchEngine() : ProteinIdentification
• hasIntensityRange() : FeatureFileOptions , PeakFileOptions
• HasInvalidLength() : NucleicAcidSearchEngine::HasInvalidLength
• hasInvalidUniqueId() : UniqueIdInterface
• hasInverseOrientation() : AxisWidget
• hasLowIntensityReporter_() : IsobaricChannelExtractor
• HasMatchingAccession() : IDFilter::HasMatchingAccession< HitType >
• HasMatchingAccessionUnordered() : IDFilter::HasMatchingAccessionUnordered< HitType >
• HasMaxMetaValue() : IDFilter::HasMaxMetaValue< HitType >
• HasMaxRank() : IDFilter::HasMaxRank< HitType >
• HasMetaValue() : HasMetaValue< MetaContainer > , IDFilter::HasMetaValue< HitType >
• hasMSLevels() : PeakFileOptions
• hasMZ() : PeptideIdentification
• hasMZRange() : FeatureFileOptions , PeakFileOptions
• hasName() : IMSAlphabet
• hasNeutralLoss() : Residue , ResidueModification
• hasNTerminalModification() : AASequence
• hasNTermNeutralLosses() : Residue
• hasPepID() : QCBase
• hasPeptide() : TargetedExperiment
• hasPeptideIdentifications() : TOPPViewBase
• HasPrecursorCharge() : HasPrecursorCharge< SpectrumType >
• hasPrecursorChromatogram() : MRMTransitionGroup< ChromatogramType, TransitionType >
• hasPrecursorCVTerms() : ReactionMonitoringTransition
• hasPrediction() : ReactionMonitoringTransition
• hasPrefix() : AASequence , String , StringUtils
• hasProtein() : TargetedExperiment
• hasRegEx() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
• hasResidue() : ResidueDB
• hasRetentionTime() : PeptideCompound
• hasRT() : PeptideIdentification
• hasRTRange() : FeatureFileOptions , PeakFileOptions
• hasSample() : ExperimentalDesign::SampleSection
• HasScanMode() : HasScanMode< SpectrumType >
• HasScanPolarity() : HasScanPolarity< SpectrumType >
• hasStream() : StreamHandler
• hasStream_() : LogStream
• hasSubsequence() : AASequence
• hasSubstring() : String , StringUtils
• hasSuffix() : AASequence , String , StringUtils
• hasTag() : Param
• hasTermWithName() : ControlledVocabulary
• hasThreePrimeMod() : NASequence
• hasTransition() : MRMTransitionGroup< ChromatogramType, TransitionType >
• hasUncommittedData() : ParamEditorDelegate
• hasUnit() : CVTerm , DataValue
• hasValidExtension() : FileHandler
• hasValidLimits() : PeptideEvidence
• hasValidPositions() : MoleculeParentMatch
• hasValidUniqueId() : UniqueIdInterface
• hasValue() : CVTerm
• hasZeroIntensities() : MSExperiment
• haveInstance_ : SuperHirnParameters
• HCID : Precursor
• HDF5Connector() : HDF5Connector
• head_ : CompressedInputSource
• header_ : QcMLFile
• header_names_ : TransitionTSVFile
• headerContextMenu_() : SpectraIdentificationViewWidget
• headerMatches() : FASTAFile::FASTAEntry
• Heap : QTClusterFinder
• HEAVY : Tagging
• heavy_channel_arginine_label_ : SILACLabeler
• HEAVY_CHANNEL_ID_ : O18Labeler
• heavy_channel_label_ : ICPLLabeler
• heavy_channel_lysine_label_ : SILACLabeler
• HEAVY_FEATURE_MAPID_ : ICPLLabeler , SILACLabeler
• height() : DIntervalBase< D > , PenaltyFactorsIntensity , PeakIntegrator::PeakArea , PeakIntegrator::PeakBackground , PeakShape
• height_ : EGHFitter1D , EGHModel , EGHTraceFitter , EmgFitter1D , EmgModel , GaussTraceFitter , Spectrum3DOpenGLCanvas
• heightColor_() : Spectrum2DCanvas
• helicity_ : SvmTheoreticalSpectrumGenerator
• hidden_ : HMMState
• hidden_entries_ : TOPPASToolConfigDialog
• HiddenMarkovModel() : HiddenMarkovModel
• hide_no_identification_ : SpectraIdentificationViewWidget
• hide_type_ : SvmTheoreticalSpectrumGenerator
• hideAxes() : Spectrum1DWidget , SpectrumWidget
• high_mz_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
• higher_better : ScoreType
• higher_better_ : IDScoreSwitcherAlgorithm , PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
• higher_is_better : PeptideHit::PepXMLAnalysisResult
• higher_score_better : IDFilter::HasGoodScore< HitType >
• higher_score_better_ : PeptideIdentification , ProteinIdentification
• highlightPeak_() : Spectrum2DCanvas
• Histogram() : Histogram< ValueType, BinSizeType >
• histogram_oob_percent_ : SignalToNoiseEstimatorMedian< Container >
• HistogramDialog() : HistogramDialog
• HistogramWidget() : HistogramWidget
• hit_pev_ : MzIdentMLDOMHandler
• hits : CsiFingerIdMzTabWriter::CsiAdapterIdentification , SiriusMzTabWriter::SiriusAdapterIdentification
• hits_ : MascotInfile , PeptideIdentification , SpectrumIdentification
• hits_endPositions : PatternAuxData< TNeedle >
• HitsByScore : NucleicAcidSearchEngine
• HitType : PeptideIdentification , ProteinIdentification
• hmdb_properties_mapping_ : AccurateMassSearchEngine
• HMDBPropsMapping : AccurateMassSearchEngine
• HMMState() : HMMState
• HN : IonSource
• horizontalProjection() : Spectrum2DWidget
• horizontalScrollBarChange() : Spectrum1DCanvas , Spectrum2DCanvas , SpectrumCanvas
• host_name_ : MascotRemoteQuery
• hover_edge_ : TOPPASScene
• hover_pos_ : TOPPASEdge
• hoveringEdgePosChanged() : TOPPASVertex
• HPLC() : HPLC
• hplc_ : ExperimentalSettings
• hplccolumn_ : HPLCVisualizer
• hplccomment_ : HPLCVisualizer
• hplcflux_ : HPLCVisualizer
• hplcinstrument_ : HPLCVisualizer
• hplcpressure_ : HPLCVisualizer
• hplctemperature_ : HPLCVisualizer
• HPLCVisualizer() : HPLCVisualizer
• hr_data_ : FeatureFinderAlgorithmIsotopeWavelet , IsotopeWaveletTransform< PeakType >
• HTML : FileTypes
• html_code_ : Ribonucleotide
• hull_points : PeakIntegrator::PeakArea
• hull_position_ : FeatureXMLFile
• HullPointType : ConvexHull2D
• hydrogen_ : PepXMLFile
• hydrogen_mass_ : PepXMLFile
• hydrophobicity_ : SvmTheoreticalSpectrumGenerator
• HYPOTHETICAL : ResidueModification