Spawn< TNeedle > Struct Template Reference

state of an AC spawn, operating on a trie More...

#include <OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h>

Public Types
typedef Size< TNeedle >::Type	TSize
typedef Value< TNeedle >::Type	TKeyword
typedef Value< TKeyword >::Type	TAlphabet
typedef Graph< Automaton< TAlphabet > >	TGraph
typedef VertexDescriptor< TGraph >::Type	TVert
typedef Pattern< TNeedle, FuzzyAC >::KeyWordLengthType	KeyWordLengthType

Public Member Functions
	Spawn (TVert init_state, KeyWordLengthType current_depth, KeyWordLengthType aaa_seen, KeyWordLengthType mm_seen)

Public Attributes
TVert	current_state
KeyWordLengthType	max_depth_decrease
	maximum loss in depths of traversed nodes (both while reporting hits and changing its own state) More...
KeyWordLengthType	ambAA_seen
	number of ambAA's which the spawn has seen More...
KeyWordLengthType	mismatches_seen
	number of mismatches the spawn has seen More...

Private Member Functions
	Spawn ()
Spawn &	operator= (const Spawn &)

Detailed Description

template<typename TNeedle>
struct seqan::Spawn< TNeedle >

state of an AC spawn, operating on a trie

Member Typedef Documentation

KeyWordLengthType

typedef Pattern<TNeedle, FuzzyAC>::KeyWordLengthType KeyWordLengthType

TAlphabet

typedef Value<TKeyword>::Type TAlphabet

TGraph

typedef Graph<Automaton<TAlphabet> > TGraph

TKeyword

typedef Value<TNeedle>::Type TKeyword

TSize

typedef Size<TNeedle>::Type TSize

TVert

typedef VertexDescriptor<TGraph>::Type TVert

Constructor & Destructor Documentation

Spawn() [1/2]

Spawn ( TVert  init_state, KeyWordLengthType  current_depth, KeyWordLengthType  aaa_seen, KeyWordLengthType  mm_seen  )

inline

Spawn() [2/2]

Spawn ( )

private

Member Function Documentation

operator=()

Spawn& operator= ( const Spawn< TNeedle > &  )

private

Member Data Documentation

ambAA_seen

KeyWordLengthType ambAA_seen

number of ambAA's which the spawn has seen

Referenced by seqan::_createSecondarySpawns(), and seqan::_spawnConsumeChar().

current_state

TVert current_state

Referenced by seqan::_consumeChar(), seqan::_createSecondarySpawns(), seqan::_spawnConsumeChar(), and seqan::addHits().

max_depth_decrease

KeyWordLengthType max_depth_decrease

maximum loss in depths of traversed nodes (both while reporting hits and changing its own state)

Referenced by seqan::_consumeChar(), seqan::_createSecondarySpawns(), seqan::_spawnConsumeChar(), and seqan::addHits().

mismatches_seen

KeyWordLengthType mismatches_seen

number of mismatches the spawn has seen

Referenced by seqan::_spawnConsumeChar().