PatternAuxData< TNeedle > Struct Template Reference

#include <OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h>

Public Types
typedef Size< TNeedle >::Type	TSize
typedef Value< TNeedle >::Type	TKeyword
typedef Value< TKeyword >::Type	TAlphabet
typedef Graph< Automaton< TAlphabet > >	TGraph
typedef VertexDescriptor< TGraph >::Type	TVert
typedef __uint8	KeyWordLengthType
typedef std::list< Spawn< TNeedle > >	Spawns
typedef std::list< Spawn< TNeedle > >::iterator	SpawnIt
typedef std::list< Spawn< TNeedle > >::const_iterator	SpawnCIt

Public Member Functions
	PatternAuxData ()
void	reset ()

Public Attributes
Spawns	spawns
TVert	data_lastState
String< TSize >	hits_endPositions
TSize	data_keywordIndex
TSize	data_needleLength

Member Typedef Documentation

KeyWordLengthType

typedef __uint8 KeyWordLengthType

SpawnCIt

typedef std::list<Spawn<TNeedle> >::const_iterator SpawnCIt

SpawnIt

typedef std::list<Spawn<TNeedle> >::iterator SpawnIt

Spawns

typedef std::list<Spawn<TNeedle> > Spawns

TAlphabet

typedef Value<TKeyword>::Type TAlphabet

TGraph

typedef Graph<Automaton<TAlphabet> > TGraph

TKeyword

typedef Value<TNeedle>::Type TKeyword

TSize

typedef Size<TNeedle>::Type TSize

TVert

typedef VertexDescriptor<TGraph>::Type TVert

Constructor & Destructor Documentation

PatternAuxData()

PatternAuxData ( )

inline

Member Function Documentation

reset()

void reset ( )

inline

Referenced by AhoCorasickAmbiguous::setProtein().

Member Data Documentation

data_keywordIndex

TSize data_keywordIndex

Referenced by seqan::_reportHit(), seqan::position(), and PatternAuxData< PeptideDB >::reset().

data_lastState

TVert data_lastState

Referenced by seqan::_masterConsumeChar(), seqan::find(), and PatternAuxData< PeptideDB >::reset().

data_needleLength

TSize data_needleLength

Referenced by seqan::_reportHit(), seqan::find(), and PatternAuxData< PeptideDB >::reset().

hits_endPositions

String<TSize> hits_endPositions

Referenced by seqan::_reportHit(), seqan::addHits(), seqan::find(), and PatternAuxData< PeptideDB >::reset().

spawns

Spawns spawns

Referenced by seqan::_createSecondarySpawns(), seqan::_masterConsumeChar(), seqan::_spawnConsumeChar(), seqan::find(), and PatternAuxData< PeptideDB >::reset().