RNPxlSearch::AnnotatedHit Struct Reference

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

Static Public Member Functions
static bool	hasBetterScore (const AnnotatedHit &a, const AnnotatedHit &b)

Public Attributes
StringView	sequence
SignedSize	peptide_mod_index = 0
Size	rna_mod_index = 0
int	isotope_error = 0
char	cross_linked_nucleotide = UNKNOWN_NUCLEOTIDE
float	score = 0
float	MIC = 0
float	err = 0
float	Morph = 0
float	pl_MIC = 0
float	pl_err = 0
float	pl_Morph = 0
float	total_MIC = 0
float	immonium_score = 0
float	precursor_score = 0
float	a_ion_score = 0
float	marker_ions_score = 0
float	partial_loss_score = 0
float	best_localization_score = 0
String	localization_scores
String	best_localization
std::vector< PeptideHit::PeakAnnotation >	fragment_annotations

Static Public Attributes
static constexpr const char	UNKNOWN_NUCLEOTIDE = '?'

Detailed Description

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space.

Member Function Documentation

hasBetterScore()

static bool hasBetterScore ( const AnnotatedHit &  a, const AnnotatedHit &  b  )

inlinestatic

References score.

Member Data Documentation

a_ion_score

float a_ion_score = 0

Referenced by RNPxlSearch::main_().

best_localization

String best_localization

best_localization_score

float best_localization_score = 0

cross_linked_nucleotide

char cross_linked_nucleotide = UNKNOWN_NUCLEOTIDE

Referenced by RNPxlSearch::main_(), and RNPxlSearch::postScoreHits_().

err

float err = 0

Referenced by RNPxlSearch::main_().

fragment_annotations

std::vector<PeptideHit::PeakAnnotation> fragment_annotations

immonium_score

float immonium_score = 0

Referenced by RNPxlSearch::main_().

isotope_error

int isotope_error = 0

Referenced by RNPxlSearch::main_().

localization_scores

String localization_scores

marker_ions_score

float marker_ions_score = 0

Referenced by RNPxlSearch::main_().

MIC

float MIC = 0

Referenced by RNPxlSearch::main_().

Morph

float Morph = 0

Referenced by RNPxlSearch::main_().

partial_loss_score

float partial_loss_score = 0

Referenced by RNPxlSearch::main_().

peptide_mod_index

SignedSize peptide_mod_index = 0

Referenced by RNPxlSearch::main_().

pl_err

float pl_err = 0

Referenced by RNPxlSearch::main_().

pl_MIC

float pl_MIC = 0

Referenced by RNPxlSearch::main_().

pl_Morph

float pl_Morph = 0

Referenced by RNPxlSearch::main_().

precursor_score

float precursor_score = 0

Referenced by RNPxlSearch::main_().

rna_mod_index

Size rna_mod_index = 0

Referenced by RNPxlSearch::main_().

score

float score = 0

Referenced by hasBetterScore(), and RNPxlSearch::main_().

sequence

StringView sequence

Referenced by RNPxlSearch::main_().

total_MIC

float total_MIC = 0

Referenced by RNPxlSearch::main_().

UNKNOWN_NUCLEOTIDE

constexpr const char UNKNOWN_NUCLEOTIDE = '?'

static