FTPeakDetectController Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.h>

Public Types
typedef std::pair< double, boost::shared_ptr< RawData > >	Map
typedef std::vector< Map >	Vec

Public Member Functions
	~FTPeakDetectController ()
	FTPeakDetectController ()
	FTPeakDetectController (const FTPeakDetectController &)
void	parseMzXMLData ()
void	startScanParsing (Vec datavec)
void	process_MS1_level_data_structure (ProcessData *)
void	add_raw_peak_to_LC_MS_run (LCElutionPeak *)
void	addLCelutionProfile (SHFeature *, LCElutionPeak *)
bool	checkIfFeatureExtractionExists (std::string)
void	process_MS2_level_data_structure (ProcessData *)
void	extract_MS2_elution_features ()
void	associateMS2FeatureToMS1Feature (MS2Feature *)
void	addMS2FeatureToMS1Feature (MS2Feature *, SHFeature *)
void	constructMS1FeatureFromMS2Feature (MS2Feature *)
void	write_out_parsed_LC_MS (LCMS *)
void	addFakeMSMSToFeature (SHFeature *)
FTPeakDetectController &	operator= (const FTPeakDetectController &)
FTPeakDetectController &	operator<= (const FTPeakDetectController &)
FTPeakDetectController &	operator>= (const FTPeakDetectController &)
FTPeakDetectController &	operator< (const FTPeakDetectController &)
FTPeakDetectController &	operator> (const FTPeakDetectController &)
void	set_target_file (std::string in)
std::string	get_target_file ()
LCMS *	getLCMS ()

Private Attributes
LCMS *	lcms_
std::vector< LCMS >	lcmsRuns_
std::string	targetMzXML
std::string	SOURCE_DIR
std::string	OUTPUT_DIR

Member Typedef Documentation

Map

typedef std::pair<double, boost::shared_ptr<RawData> > Map

Vec

typedef std::vector<Map> Vec

Constructor & Destructor Documentation

~FTPeakDetectController()

~FTPeakDetectController

(

)

FTPeakDetectController() [1/2]

FTPeakDetectController

(

)

FTPeakDetectController() [2/2]

FTPeakDetectController

(

const FTPeakDetectController &

)

Member Function Documentation

add_raw_peak_to_LC_MS_run()

void add_raw_peak_to_LC_MS_run

(

LCElutionPeak *

)

addFakeMSMSToFeature()

void addFakeMSMSToFeature

(

SHFeature *

)

addLCelutionProfile()

void addLCelutionProfile	(	SHFeature *	,
		LCElutionPeak *
	)

addMS2FeatureToMS1Feature()

void addMS2FeatureToMS1Feature	(	MS2Feature *	,
		SHFeature *
	)

associateMS2FeatureToMS1Feature()

void associateMS2FeatureToMS1Feature

(

MS2Feature *

)

checkIfFeatureExtractionExists()

bool checkIfFeatureExtractionExists

(

std::string

)

constructMS1FeatureFromMS2Feature()

void constructMS1FeatureFromMS2Feature

(

MS2Feature *

)

extract_MS2_elution_features()

void extract_MS2_elution_features

(

)

get_target_file()

std::string get_target_file ( )

inline

References FTPeakDetectController::targetMzXML.

getLCMS()

LCMS * getLCMS ( )

inline

References FTPeakDetectController::lcms_.

operator<()

FTPeakDetectController& operator<

(

const FTPeakDetectController &

)

operator<=()

FTPeakDetectController& operator<=

(

const FTPeakDetectController &

)

operator=()

FTPeakDetectController& operator=

(

const FTPeakDetectController &

)

operator>()

FTPeakDetectController& operator>

(

const FTPeakDetectController &

)

operator>=()

FTPeakDetectController& operator>=

(

const FTPeakDetectController &

)

parseMzXMLData()

void parseMzXMLData

(

)

process_MS1_level_data_structure()

void process_MS1_level_data_structure

(

ProcessData *

)

process_MS2_level_data_structure()

void process_MS2_level_data_structure

(

ProcessData *

)

set_target_file()

void set_target_file ( std::string  in )

inline

References FTPeakDetectController::targetMzXML.

startScanParsing()

void startScanParsing

(

Vec

datavec

)

write_out_parsed_LC_MS()

void write_out_parsed_LC_MS

(

LCMS *

)

Member Data Documentation

lcms_

LCMS* lcms_

private

Referenced by FTPeakDetectController::getLCMS().

lcmsRuns_

std::vector<LCMS> lcmsRuns_

private

OUTPUT_DIR

std::string OUTPUT_DIR

private

SOURCE_DIR

std::string SOURCE_DIR

private

targetMzXML

std::string targetMzXML

private

Referenced by FTPeakDetectController::get_target_file(), and FTPeakDetectController::set_target_file().