Representation of a digestion enzyme for RNA (RNase) More...

#include <OpenMS/CHEMISTRY/DigestionEnzymeRNA.h>

Inheritance diagram for DigestionEnzymeRNA:

Public Member Functions
void	setThreePrimeGain (const String &value)
	sets the 3' gain (as a nucleotide modification code) More...

String	getThreePrimeGain () const
	returns the 3' gain (as a nucleotide modification code) More...

void	setFivePrimeGain (const String &value)
	sets the 5' gain (as a nucleotide modification code) More...

String	getFivePrimeGain () const
	returns the 5' gain (as a nucleotide modification code) More...

bool	setValueFromFile (const String &key, const String &value) override
	Set the value of a member variable based on an entry from an input file. More...

Public Member Functions inherited from DigestionEnzyme
	DigestionEnzyme (const DigestionEnzyme &enzyme)
	copy constructor More...

	DigestionEnzyme (const String &name, const String &cleavage_regex, const std::set< String > &synonyms=std::set< String >(), String regex_description="")
	detailed constructor More...

virtual	~DigestionEnzyme ()
	destructor More...

DigestionEnzyme &	operator= (const DigestionEnzyme &enzyme)
	assignment operator More...

void	setName (const String &name)
	sets the name of the enzyme More...

String	getName () const
	returns the name of the enzyme More...

void	setSynonyms (const std::set< String > &synonyms)
	sets the synonyms More...

void	addSynonym (const String &synonym)
	adds a synonym More...

const std::set< String > &	getSynonyms () const
	returns the synonyms More...

void	setRegEx (const String &cleavage_regex)
	sets the cleavage regex More...

String	getRegEx () const
	returns the cleavage regex More...

void	setRegExDescription (const String &value)
	sets the regex description More...

String	getRegExDescription () const
	returns the regex description More...

bool	operator== (const DigestionEnzyme &enzyme) const
	equality operator More...

bool	operator!= (const DigestionEnzyme &enzyme) const
	inequality operator More...

bool	operator== (const String &cleavage_regex) const
	equality operator for regex More...

bool	operator!= (const String &cleavage_regex) const
	equality operator for regex More...

bool	operator< (const DigestionEnzyme &enzyme) const
	order operator More...

Protected Attributes
String	three_prime_gain_

String	five_prime_gain_

Protected Attributes inherited from DigestionEnzyme
String	name_

String	cleavage_regex_

std::set< String >	synonyms_

String	regex_description_

Additional Inherited Members
Protected Member Functions inherited from DigestionEnzyme
	DigestionEnzyme ()
	default constructor More...

Detailed Description

Representation of a digestion enzyme for RNA (RNase)

Member Function Documentation

◆ getFivePrimeGain()

String getFivePrimeGain ( ) const

returns the 5' gain (as a nucleotide modification code)

◆ getThreePrimeGain()

String getThreePrimeGain ( ) const

returns the 3' gain (as a nucleotide modification code)

◆ setFivePrimeGain()

void setFivePrimeGain ( const String & value )

sets the 5' gain (as a nucleotide modification code)

◆ setThreePrimeGain()

void setThreePrimeGain ( const String & value )

sets the 3' gain (as a nucleotide modification code)

◆ setValueFromFile()

bool setValueFromFile	(	const String &	key,
		const String &	value
	)

overridevirtual

Set the value of a member variable based on an entry from an input file.

Returns whether the key was recognized and the value set successfully.

Reimplemented from DigestionEnzyme.

Member Data Documentation

◆ five_prime_gain_

String five_prime_gain_

protected

◆ three_prime_gain_

String three_prime_gain_