Class Members - Functions

- f -

Factory() : Factory< FactoryProduct >
FailedAPICall() : FailedAPICall
FalseDiscoveryRate() : FalseDiscoveryRate
FASTAEntry() : FASTAFile::FASTAEntry
FASTAFile() : FASTAFile
FastaIterator() : FastaIterator
FastaIteratorIntern() : FastaIteratorIntern
fatalError() : XMLHandler , XMLValidator
FeaFiModule() : FeaFiModule< PeakType >
Feature() : Feature
feature() : KDTreeFeatureMaps
FeatureDeconvolution() : FeatureDeconvolution
FeatureDistance() : FeatureDistance
FeatureEditDialog() : FeatureEditDialog
FeatureFileOptions() : FeatureFileOptions
FeatureFinder() : FeatureFinder
FeatureFinderAlgorithm() : FeatureFinderAlgorithm
FeatureFinderAlgorithmIsotopeWavelet() : FeatureFinderAlgorithmIsotopeWavelet
FeatureFinderAlgorithmMRM() : FeatureFinderAlgorithmMRM
FeatureFinderAlgorithmPicked() : FeatureFinderAlgorithmPicked
FeatureFinderAlgorithmSH() : FeatureFinderAlgorithmSH
FeatureFinderAlgorithmSHCtrl() : FeatureFinderAlgorithmSHCtrl
FeatureFindingMetabo() : FeatureFindingMetabo
FeatureGroupingAlgorithm() : FeatureGroupingAlgorithm
FeatureGroupingAlgorithmKD() : FeatureGroupingAlgorithmKD
FeatureGroupingAlgorithmLabeled() : FeatureGroupingAlgorithmLabeled
FeatureGroupingAlgorithmQT() : FeatureGroupingAlgorithmQT
FeatureGroupingAlgorithmUnlabeled() : FeatureGroupingAlgorithmUnlabeled
FeatureHandle() : FeatureHandle
FeatureHandleMutable_() : FeatureHandle::FeatureHandleMutable_
FeatureHypothesis() : FeatureHypothesis
FeatureLCProfile() : FeatureLCProfile
FeatureMap() : FeatureMap
FeatureOpenMS() : FeatureOpenMS
FeatureXMLFile() : FeatureXMLFile
FidHandler() : FidHandler
field_changed_() : DataFilterDialog
file_() : GlobalExceptionHandler
fileChanged() : FileWatcher
fileChanged_() : TOPPViewBase
FileDescription() : ConsensusMap::FileDescription
FileEmpty() : FileEmpty
fileList() : File
fileNamesValid() : TOPPASInputFileListVertex
FileNameTooLong() : FileNameTooLong
fileNameValid() : TOPPASInputFileDialog
FileNotFound() : FileNotFound
FileNotReadable() : FileNotReadable
FileNotWritable() : FileNotWritable
fileOpen() : QApplicationTOPP
FileWatcher() : FileWatcher
fillCalibrants() : InternalCalibration
fillChromatogramData_() : MzMLHandler
fillComboBox_() : BaseVisualizerGUI
fillComboBoxes_() : TOPPASIOMappingDialog
fillData_() : MzDataHandler
fillDensities() : PosteriorErrorProbabilityModel
fillExtendedResidueTable_() : IntegerMassDecomposer< ValueType, DecompositionValueType >
fillFromInputLine() : FuzzyStringComparator::StreamElement_
fillGaps_() : IsotopeDistribution
fillIDs_() : InternalCalibration
fillInputVector_() : IsobaricIsotopeCorrector
fillIntensities() : BaseModel< D >
fillIntensity() : BaseModel< D >
fillLabelMasterList_() : MultiplexDeltaMassesGenerator
fillLeft() : String , StringUtils
fillRight() : String , StringUtils
filter() : GaussFilter , GaussFilterAlgorithm , MorphologicalFilter , MultiplexFilteringCentroided , MultiplexFilteringProfile , SavitzkyGolayFilter
filterByPeakWidth() : ElutionPeakDetection
filterCCs_() : MapAlignmentAlgorithmKD
filterContextMenu() : TOPPViewBase
filterDecomps_() : CompNovoIdentificationBase
filterDeisotopicMSPeak() : ProcessData
filterDetectability() : DetectabilitySimulation
filterEdit() : TOPPViewBase
filterExperiment() : GaussFilter , MorphologicalFilter , SavitzkyGolayFilter
FilterFunctor() : FilterFunctor
filterHits_() : MetaDataBrowser
filterHitsByRank() : IDFilter
filterHitsByScore() : IDFilter
filterHitsBySignificance() : IDFilter
filterIsotopicIntensities() : TOPPMetaProSIP
filterPeakMap() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
filterPeakSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
filterPeakSpectrumForTopNInJumpingWindow() : WindowMower
filterPeakSpectrumForTopNInSlidingWindow() : WindowMower
filterPeptideEvidences() : IDFilter::DigestionFilter , IDFilter
FilterPeptideEvidences() : IDFilter
filterPeptideIds_() : PrecursorIonSelection
filterPeptidesByCharge() : IDFilter
filterPeptidesByLength() : IDFilter
filterPeptidesByMZ() : IDFilter
filterPeptidesByMZError() : IDFilter
filterPeptidesByRT() : IDFilter
filterPeptidesByRTPredictPValue() : IDFilter
filterPermuts_() : CompNovoIdentificationBase
filterProtIds_() : PrecursorIonSelection
filterRange() : MorphologicalFilter
filterSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower
filterTaxonomyIdentifier_() : PrecursorIonSelectionPreprocessing
finalizeCluster() : QTCluster
find() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , File
find_AC() : MS2Info
find_all_tryptic() : MRMDecoy
find_closest_mz_match() : ProcessData
find_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
find_feature_by_ID() : LCMS
find_LC_MS_by_ID() : LCMS
find_match_by_id() : SHFeature
find_Modification() : MS2Info
find_nearest() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
find_nearest_if() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
find_retention_time() : ProcessData
find_true_peak() : LCElutionPeak
find_within_range() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
findApexRT() : TOPPMetaProSIP
findBestIsotopeFit_() : FeatureFinderAlgorithmPicked
findByIndex() : SpectrumLookup
findByNativeID() : SpectrumLookup
findByReference() : SpectrumLookup
findByRegExpMatch_() : SpectrumLookup
findByRT() : SpectrumLookup
findByScanNumber() : SpectrumLookup
findClosestPeak_() : PeakPickerMRM
findCommonMetaKeys() : MetaInfoInterfaceUtils
findConnectedComponent() : PeptideProteinResolution
findDatabase() : File
findDoc() : File
findEntry() : Param::ParamNode
findEntry_() : TOPPBase
findEntryRecursive() : Param::ParamNode
findExecutable() : File
findFeaturesToMerge() : MS1FeatureMerger
findFirst() : Param
findHit() : ProteinIdentification
findIndexListOffset() : IndexedMzMLDecoder
findIsotope_() : FeatureFinderAlgorithmPicked
findLargestPeak() : MRMTransitionGroupPicker
findLocalExtrema() : ElutionPeakDetection
findLocalFeatures_() : FeatureFindingMetabo
findMatches() : ModificationDefinitionsSet
findMatchingPeaks_() : TwoDOptimization
findMaxByIntPeak() : MassTrace
findMaxima() : PeakPickerMaxima
findMinimalProteinList() : PSProteinInference
findModificationIndex() : ModificationsDB
findMS2Fragment() : MS2ConsensusSpectrum
findMzKey() : BackgroundControl
findNearest() : MSChromatogram , MSSpectrum , MZTrafoModel
findNearest_() : MultiplexFilteringProfile
findNearestNeighbour_() : GridBasedClustering< Metric >
findNearestPeak_() : Spectrum2DCanvas
findNext() : Param
findNode() : Param::ParamNode
findParentOf() : Param::ParamNode
findPeakAtPosition_() : Spectrum1DCanvas
findPeptide() : TransitionHelper
findPeptideEntry_() : ProteinResolver
findR() : RWrapper
findReferenceChannel_() : IsobaricNormalizer
findRelevantFilePaths_() : QuantitativeExperimentalDesign
findScript() : RWrapper
findSearchParameters_() : MzIdentMLDOMHandler
findStream_() : LogStream
findTrKey() : BackgroundControl
findWinner_() : PeakIntensityPredictor
finishAdding_() : BaseVisualizerGUI , Spectrum1DCanvas , Spectrum2DCanvas , Spectrum3DCanvas , SpectrumCanvas
finishContextMenu_() : Spectrum2DCanvas
finishHoveringEdge() : TOPPASScene , TOPPASVertex
finishTOPPToolExecution() : TOPPViewBase
firstExec() : TOPPASIOMappingDialog
firstToUpper() : String , StringUtils
fit() : EGHTraceFitter , GaussTraceFitter , GammaDistributionFitter , GaussFitter , GumbelDistributionFitter , PosteriorErrorProbabilityModel , TraceFitter
fit1d() : BiGaussFitter1D , EGHFitter1D , EmgFitter1D , ExtendedIsotopeFitter1D , Fitter1D , GaussFitter1D , IsotopeFitter1D
fitElutionModels() : ElutionModelFitter
fitLOWESS() : MapAlignmentAlgorithmKD
fitModel() : TransformationDescription
fitOffset_() : MaxLikeliFitter1D
fitPeakShape_() : PeakPickerCWT
fitRT_() : EmgScoring , FeatureFinderAlgorithmMRM
Fitter1D() : Fitter1D
fixRange() : Spectrum1DGoToDialog , Spectrum2DGoToDialog
flipLayer() : Spectrum1DCanvas
flippedLayersExist() : Spectrum1DCanvas
fload() : CsvFile
flush() : IChromatogramsWriter , ISpectraWriter , LogStream , MSDataSqlConsumer
focusByTab() : TOPPASBase
focusInEvent() : OpenMSLineEdit
focusOutEvent() : OpenMSLineEdit , Spectrum3DOpenGLCanvas , SpectrumCanvas
followRedirect() : MascotRemoteQuery
followUpValid() : IsobaricChannelExtractor::PuritySate_
forwardDump() : HiddenMarkovModel
forwardTOPPOutput() : TOPPASToolVertex
FragmentAnnotationDetail_() : FragmentAnnotationDetail_
fragmentAnnotationDetailsToPHFA() : FragmentAnnotationHelper
fragmentAnnotationDetailsToString() : FragmentAnnotationHelper
fromCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabNullAbleInterface , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
fromLocalFile() : TOPPASResource
fromQStringList() : StringListUtils
fromString() : AASequence , DataFilters::DataFilter , MultiGradient
front() : ConstRefVector< ContainerT >
FTPeakDetectController() : FTPeakDetectController
fullDimensionName() : Peak2D
fullDimensionNameMZ() : Peak2D
fullDimensionNameRT() : Peak2D
fullDimensionUnit() : Peak2D
fullDimensionUnitMZ() : Peak2D
fullDimensionUnitRT() : Peak2D
FullSwathFileConsumer() : FullSwathFileConsumer
function_() : GlobalExceptionHandler
FuzzyStringComparator() : FuzzyStringComparator