- e -

• edgesBegin() : TOPPASScene
• edgesEnd() : TOPPASScene
• edit() : ParamTree
• editCurrentItem() : TOPPASInputFilesDialog
• editMetadata() : TOPPViewBase
• editParam() : TOPPASToolVertex
• editText() : Annotation1DItem
• EDTAFile() : EDTAFile
• efficient_replace_and_optimise() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• EGHFitter1D() : EGHFitter1D
• EGHFitterFunctor() : EGHFitter1D::EGHFitterFunctor
• EGHModel() : EGHModel
• EGHTraceFitter() : EGHTraceFitter
• EGHTraceFunctor() : EGHTraceFitter::EGHTraceFunctor
• EgmFitterFunctor() : EmgFitter1D::EgmFitterFunctor
• Element() : Element
• ElementDB() : ElementDB
• ElementNotFound() : ElementNotFound
• elutionModelFit() : EmgScoring
• ElutionModelFitter() : ElutionModelFitter
• ElutionPeakDetection() : ElutionPeakDetection
• EmgFitter1D() : EmgFitter1D
• EmgModel() : EmgModel
• EmgScoring() : EmgScoring
• emitChanged() : TOPPASEdge
• emitToolStarted() : TOPPASToolVertex
• EmpiricalFormula() : EmpiricalFormula
• empty() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , CVTermList , CVTermListInterface , File , HashGrid< Cluster > , IMSIsotopeDistribution , BilinearInterpolation< Key, Value > , LinearInterpolation< Key, Value > , MetaInfo , MSExperiment , OnDiscMSExperiment , Param , PeptideIdentification , SparseVector< Value > , SpectrumLookup
• enable_() : ToolsDialog
• enableFeatureNumber() : Spectrum2DGoToDialog
• enableLogging_() : TOPPBase
• enableTransition() : HiddenMarkovModel
• enableTransition_() : HiddenMarkovModel
• encloses() : _Region< __K, _Val, _SubVal, _Acc, _Cmp > , ConvexHull2D , DBoundingBox< D > , DRange< D > , Feature
• encode() : Base64
• encodeCompositionVector() : LibSVMEncoder
• encodeCompositionVectors() : LibSVMEncoder
• encodeIntegers() : Base64
• encodeLibSVMProblem() : LibSVMEncoder
• encodeLibSVMProblemWithCompositionAndLengthVectors() : LibSVMEncoder
• encodeLibSVMProblemWithCompositionLengthAndWeightVectors() : LibSVMEncoder
• encodeLibSVMProblemWithCompositionVectors() : LibSVMEncoder
• encodeLibSVMProblemWithOligoBorderVectors() : LibSVMEncoder
• encodeLibSVMVector() : LibSVMEncoder
• encodeLibSVMVectors() : LibSVMEncoder
• encodeNP() : MSNumpressCoder
• encodeNPRaw() : MSNumpressCoder
• encodeOligo() : LibSVMEncoder
• encodeOligoBorders() : LibSVMEncoder
• encodeProblemWithOligoBorderVectors() : LibSVMEncoder
• encodeStrings() : Base64
• end() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , BinnedSpectrum , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , DPosition< D, TCoordinateType > , EmpiricalFormula , HashGrid< Cluster > , IsotopeDistribution , IsotopeWaveletTransform< PeakType >::TransSpectrum , MassTrace , Histogram< ValueType, BinSizeType > , MSExperiment , Param , SparseVector< Value > , TextFile
• endElement() : ConsensusXMLFile , CVMappingFile , FeatureXMLFile , IdXMLFile , MascotXMLHandler , MzDataHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , ParamXMLHandler , PTMXMLHandler , SemanticValidator , ToolDescriptionHandler , TraMLHandler , UnimodXMLHandler , XMLHandler , XQuestResultXMLHandler , OMSSAXMLFile , PepXMLFile , PepXMLFileMascot , ProtXMLFile , QcMLFile , XTandemXMLFile
• endEnzyme() : EnzymesDB
• EndParsingSoftly() : XMLHandler::EndParsingSoftly
• endPos() : TOPPASEdge
• endProgress() : GUIProgressLoggerImpl , ProgressLogger , ProgressLogger::ProgressLoggerImpl
• endResidue() : ResidueDB
• endRun_() : MascotRemoteQuery
• enforceEncoding_() : XMLFile
• EnhancedTabBar() : EnhancedTabBar
• EnhancedWorkspace() : EnhancedWorkspace
• enhancedWorkspaceWindowChanged() : TOPPViewBase
• enlarge() : DBoundingBox< D >
• enqueueProcess() : TOPPASScene
• ensureAnnotationsWithinDataRange_() : Spectrum1DCanvas
• ensureLastChar() : String , StringUtils
• ensureMapsAreFilled_() : CachedSwathFileConsumer , FullSwathFileConsumer , MzMLSwathFileConsumer , RegularSwathFileConsumer
• ensureUniqueId() : UniqueIdInterface
• ensureWithinDataRange() : Annotation1DCaret , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem , Annotation1DTextItem
• enterEvent() : SpectrumCanvas , TOPPASTreeView , TOPPASWidget
• entirePipelineFinished() : TOPPASScene
• enumerateCrossLinksAndMasses() : OPXLHelper
• enumToName() : MZTrafoModel
• EnzymaticDigestion() : EnzymaticDigestion
• EnzymaticDigestionLogModel() : EnzymaticDigestionLogModel
• Enzyme() : Enzyme
• EnzymesDB() : EnzymesDB
• equal_() : XMLHandler
• EqualInTolerance() : EqualInTolerance< CompareType >
• equals() : Map< Key, T >
• erase() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , ConstRefVector< ContainerT > , HashGrid< Cluster > , IMSAlphabet , SparseVector< Value >
• erase_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• erase_match_list() : SHFeature
• erase_MZ_cluster_element() : ProcessData
• erase_MZ_LIST_element() : ProcessData
• eraseMinDistance_() : GridBasedClustering< Metric >
• error() : XMLHandler , XMLValidator
• errorString() : XMLHandler
• estimate_() : SignalToNoiseEstimator< Container >
• estimateForFragmentFromDNAWeight() : IsotopeDistribution
• estimateForFragmentFromPeptideWeight() : IsotopeDistribution
• estimateForFragmentFromPeptideWeightAndS() : IsotopeDistribution
• estimateForFragmentFromRNAWeight() : IsotopeDistribution
• estimateForFragmentFromWeightAndComp() : IsotopeDistribution
• estimateFromDNAWeight() : IsotopeDistribution
• estimateFromPeptideWeight() : IsotopeDistribution
• estimateFromPeptideWeightAndS() : IsotopeDistribution
• estimateFromRNAWeight() : IsotopeDistribution
• estimateFromWeightAndComp() : EmpiricalFormula , IsotopeDistribution
• estimateFromWeightAndCompAndS() : EmpiricalFormula , IsotopeDistribution
• estimateFWHM() : MassTrace
• estimateNoise() : SignalToNoiseEstimatorMedianRapid
• estimateNoiseFromRandomMS1Scans() : TOPPViewBase
• estimatePeakWidth() : PeakPickerCWT
• estimatePrecursorWeight_() : CompNovoIdentification , CompNovoIdentificationBase
• estimateRTRange() : OpenSwathHelper
• estimateType() : PeakTypeEstimator
• estimateUntrainedTransitions() : HiddenMarkovModel
• EuclideanSimilarity() : EuclideanSimilarity
• eval() : BSpline2d , CubicSpline2d , GaussFitter , QuadraticRegression , SplinePackage , SplineSpectrum::Navigator , TransformationModelInterpolated::Interpolator
• evaluate() : HiddenMarkovModel , MapAlignmentEvaluationAlgorithm , MapAlignmentEvaluationAlgorithmPrecision , MapAlignmentEvaluationAlgorithmRecall , TransformationModel , TransformationModelBSpline , TransformationModelInterpolated , TransformationModelLinear , TransformationModelLowess
• evaluateEGH_() : EGHModel
• event() : QApplicationTOPP
• execQuery() : MascotRemoteQuery
• executeBlobBind_() : MzMLSqliteHandler
• executeSql_() : MzMLSqliteHandler
• executionFinished() : TOPPASToolVertex
• exist() : IntegerMassDecomposer< ValueType, DecompositionValueType > , MassDecomposer< ValueType, DecompositionValueType >
• exists() : ControlledVocabulary , File , IDFilter::GetMatchingItems< HitType, Entry > , MetaInfo , MultiGradient , Param
• exists_() : ParamEditorDelegate
• existsRun() : QcMLFile
• existsRunQualityParameter() : QcMLFile
• existsSet() : QcMLFile
• existsSetQualityParameter() : QcMLFile
• expandPrefix_() : LogStreamBuf
• expandToBoundingBox() : ConvexHull2D
• expectList_() : XMLHandler
• ExperimentalSettings() : ExperimentalSettings
• ExperimentalSettingsVisualizer() : ExperimentalSettingsVisualizer
• exportAsImage() : IDEvaluationBase , TOPPASBase
• exportAttachment() : QcMLFile
• exportEntries_() : SpectraIdentificationViewWidget
• exportIDstats() : QcMLFile
• exportMzTab_() : AccurateMassSearchEngine , MetaboliteSpectralMatching
• exportQP() : QcMLFile
• exportQPs() : QcMLFile
• extend() : DRange< D >
• extendBox_() : IsotopeWaveletTransform< PeakType >
• extendClustersY() : GridBasedClustering< Metric >
• ExtendedIsotopeFitter1D() : ExtendedIsotopeFitter1D
• ExtendedIsotopeModel() : ExtendedIsotopeModel
• extendMassTrace_() : FeatureFinderAlgorithmPicked
• extendMassTraces_() : FeatureFinderAlgorithmPicked
• extract_elution_peaks() : ProcessData
• extract_id_() : ChromatogramExtractor
• extract_MS2_elution_features() : FTPeakDetectController
• extract_scan_index() : SiriusMzTabWriter
• extract_value_bartlett() : ChromatogramExtractor
• extract_value_tophat() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
• extractChannels() : IsobaricChannelExtractor
• extractChromatograms() : ChromatogramExtractor , ChromatogramExtractorAlgorithm
• extractCoverageStrings() : TOPPViewIdentificationViewBehavior
• extractDateTime_() : XQuestResultXMLHandler
• extractFragmentsFromSpectra() : ClusteredMS2ConsensusSpectrum
• extractIncorporationsAtCorrelationMaxima() : TOPPMetaProSIP
• extractIncorporationsAtHeighestDecompositionWeights() : TOPPMetaProSIP
• extractIndexPairsFromBrackets_() : MzTabFile
• extractIntensities_() : ConfidenceScoring
• extractIntensityVectors() : ConsensusMapNormalizerAlgorithmQuantile
• extractIsotopicIntensities() : TOPPMetaProSIP
• extractLabelSet() : MultiplexDeltaMassesGenerator
• extractMarkerIons() : RNPxlMarkerIonExtractor
• extractNumberOfSubSamples_() : MzTabFile
• extractNumPeptides_() : MzTabFile
• extractNumPeptidesDistinct_() : MzTabFile
• extractNumPeptidesUnambiguous_() : MzTabFile
• extractPeaks() : FeatureFinderAlgorithmSHCtrl
• extractPeakSpectrum() : TOPPMetaProSIP
• extractPeptideModifications_() : MzTabFile
• extractPeptideSequences() : IDFilter
• extractProteinAccession_() : MzTabFile
• extractProteinAccessionsSet() : PeptideHit
• extractScanNumber() : SpectrumLookup
• extractXICs() : MetaProSIPXICExtraction
• extractXICsOfIsotopeTraces() : MetaProSIPXICExtraction