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PlainMSDataWritingConsumer Member List

This is the complete list of members for PlainMSDataWritingConsumer, including all inherited members.

ActionMode enum nameXMLHandler
add_dataprocessing_MSDataWritingConsumerprotected
addDataProcessing(DataProcessing d)MSDataWritingConsumervirtual
additional_dataprocessing_MSDataWritingConsumerprotected
addSpectrumMetaData_(const std::vector< MzMLHandlerHelper::BinaryData > &input_data, const Size n, SpectrumType &spectrum) constMzMLHandlerprotected
asBool_(const String &in)XMLHandlerinlineprotected
asDateTime_(String date_string)XMLHandlerinlineprotected
asDouble_(const String &in)XMLHandlerinlineprotected
asFloat_(const String &in)XMLHandlerinlineprotected
asInt_(const String &in)XMLHandlerinlineprotected
asInt_(const XMLCh *in)XMLHandlerinlineprotected
asUInt_(const String &in)XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
BinaryData typedefMzMLHandlerprotected
cexp_MzMLHandlerprotected
characters(const XMLCh *const chars, const XMLSize_t length)MzMLHandlervirtual
chromatogram_MzMLHandlerprotected
chromatogram_countMzMLHandlerprotected
chromatogram_data_MzMLHandlerprotected
ChromatogramPeakType typedefMzMLHandlerprotected
chromatograms_expected_MSDataWritingConsumerprotected
chromatograms_offsetsMzMLHandlerprotected
chromatograms_written_MSDataWritingConsumerprotected
ChromatogramType typedefMSDataWritingConsumer
consumeChromatogram(ChromatogramType &c)MSDataWritingConsumervirtual
consumer_MzMLHandlerprotected
consumeSpectrum(SpectrumType &s)MSDataWritingConsumervirtual
current_id_MzMLHandlerprotected
cv_MzMLHandlerprotected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerinlineprotected
data_MzMLHandlerprotected
decoder_MzMLHandlerprotected
default_array_length_MzMLHandlerprotected
default_processing_MzMLHandlerprotected
dps_MSDataWritingConsumerprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname)MzMLHandlervirtual
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception)XMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
exp_MzMLHandlerprotected
fatalError(const xercesc::SAXParseException &exception)XMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
file_XMLHandlerprotected
fillChromatogramData_()MzMLHandlerprotected
getChildWithName_(const String &parent_accession, const String &name) constMzMLHandlerprotected
getCounts(Size &spectra_counts, Size &chromatogram_counts)MzMLHandlerinline
getNrChromatogramsWritten()MSDataWritingConsumervirtual
getNrSpectraWritten()MSDataWritingConsumervirtual
getOptions()MzMLHandlerinline
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession="")MzMLHandlerprotected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value)MzMLHandlerprotected
in_spectrum_list_MzMLHandlerprotected
instruments_MzMLHandlerprotected
LOAD enum valueXMLHandler
logger_MzMLHandlerprotected
mapping_MzMLHandlerprotected
MapType typedefMSDataWritingConsumer
MSDataWritingConsumer(String filename)MSDataWritingConsumerexplicit
MzMLHandler(MapType &exp, const String &filename, const String &version, ProgressLogger &logger)MzMLHandler
MzMLHandler(const MapType &exp, const String &filename, const String &version, const ProgressLogger &logger)MzMLHandler
ofs_MSDataWritingConsumerprotected
open_tags_XMLHandlerprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
options_MzMLHandlerprotected
PeakType typedefMzMLHandlerprotected
PlainMSDataWritingConsumer(String filename)PlainMSDataWritingConsumerinlineexplicit
populateChromatogramsWithData()MzMLHandlerprotected
populateChromatogramsWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &default_arr_length, const PeakFileOptions &peak_file_options, ChromatogramType &inp_chromatogram)MzMLHandlerprotected
populateSpectraWithData()MzMLHandlerprotected
populateSpectraWithData_(std::vector< MzMLHandlerHelper::BinaryData > &input_data, Size &default_arr_length, const PeakFileOptions &peak_file_options, SpectrumType &spectrum)MzMLHandlerprotected
processChromatogram_(MapType::ChromatogramType &)PlainMSDataWritingConsumerinlineprivatevirtual
processing_MzMLHandlerprotected
processSpectrum_(MapType::SpectrumType &)PlainMSDataWritingConsumerinlineprivatevirtual
ref_param_MzMLHandlerprotected
reset()XMLHandler
rt_set_MzMLHandlerprotected
samples_MzMLHandlerprotected
scan_countMzMLHandlerprotected
selected_ion_count_MzMLHandlerprotected
setExpectedSize(Size expectedSpectra, Size expectedChromatograms)MSDataWritingConsumervirtual
setExperimentalSettings(const ExperimentalSettings &exp)MSDataWritingConsumervirtual
setMSDataConsumer(Interfaces::IMSDataConsumer *consumer)MzMLHandlerinline
setOptions(const PeakFileOptions &opt)MzMLHandlerinline
settings_MSDataWritingConsumerprotected
skip_chromatogram_MzMLHandlerprotected
skip_spectrum_MzMLHandlerprotected
sm_XMLHandlerprotected
software_MzMLHandlerprotected
source_files_MzMLHandlerprotected
spec_MzMLHandlerprotected
spectra_expected_MSDataWritingConsumerprotected
spectra_offsetsMzMLHandlerprotected
spectra_written_MSDataWritingConsumerprotected
spectrum_data_MzMLHandlerprotected
SpectrumType typedefMSDataWritingConsumer
started_writing_MSDataWritingConsumerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes)MzMLHandlervirtual
STORE enum valueXMLHandler
validateCV_(const ControlledVocabulary::CVTerm &c, const String &path, const Internal::MzMLValidator &validator) constMzMLHandlerprotected
validator_MSDataWritingConsumerprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception)XMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
writeBinaryDataArray(std::ostream &os, const PeakFileOptions &pf_options_, std::vector< DataType > data_to_encode, bool is32bit, String array_type)MzMLHandlerprotected
writeChromatogram_(std::ostream &os, const ChromatogramType &chromatogram, Size c, Internal::MzMLValidator &validator)MzMLHandlerprotected
writeContainerData(std::ostream &os, const PeakFileOptions &pf_options_, const ContainerT &container, String array_type)MzMLHandlerprotected
writeCV_(const ControlledVocabulary::CVTerm &c, const DataValue &metaValue) constMzMLHandlerprotected
writeDataProcessing_(std::ostream &os, const String &id, const std::vector< ConstDataProcessingPtr > &dps, Internal::MzMLValidator &validator)MzMLHandlerprotected
writeHeader_(std::ostream &os, const MapType &exp, std::vector< std::vector< ConstDataProcessingPtr > > &dps, Internal::MzMLValidator &validator)MzMLHandlerprotected
writePrecursor_(std::ostream &os, const Precursor &precursor, Internal::MzMLValidator &validator)MzMLHandlerprotected
writeProduct_(std::ostream &os, const Product &product, Internal::MzMLValidator &validator)MzMLHandlerprotected
writeSoftware_(std::ostream &os, const String &id, const Software &software, Internal::MzMLValidator &validator)MzMLHandlerprotected
writeSourceFile_(std::ostream &os, const String &id, const SourceFile &software, Internal::MzMLValidator &validator)MzMLHandlerprotected
writeSpectrum_(std::ostream &os, const SpectrumType &spec, Size s, Internal::MzMLValidator &validator, bool renew_native_ids, std::vector< std::vector< ConstDataProcessingPtr > > &dps)MzMLHandlerprotected
writeTo(std::ostream &os)MzMLHandlervirtual
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, UInt indent, String path, Internal::MzMLValidator &validator) constMzMLHandlerprotected
OpenMS::Internal::XMLHandler::writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
writing_chromatograms_MSDataWritingConsumerprotected
writing_spectra_MSDataWritingConsumerprotected
XMLHandler(const String &filename, const String &version)XMLHandler
~IMSDataConsumer()IMSDataConsumerinlinevirtual
~MSDataWritingConsumer()MSDataWritingConsumervirtual
~MzMLHandler()MzMLHandlervirtual
~XMLHandler()XMLHandlervirtual
OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:12 using doxygen 1.8.13