EnzymaticDigestion Member List

This is the complete list of members for EnzymaticDigestion, including all inherited members.

countMissedCleavages_(const std::vector< Size > &cleavage_positions, Size pep_start, Size pep_end) const	EnzymaticDigestion	inlineprotected
digest(const AASequence &protein, std::vector< AASequence > &output) const	EnzymaticDigestion
digestUnmodifiedString(const StringView sequence, std::vector< StringView > &output, Size min_length=1, Size max_length=0) const	EnzymaticDigestion
EnzymaticDigestion()	EnzymaticDigestion
EnzymaticDigestion(const EnzymaticDigestion &rhs)	EnzymaticDigestion
enzyme_	EnzymaticDigestion	protected
getEnzymeName() const	EnzymaticDigestion
getMissedCleavages() const	EnzymaticDigestion
getSpecificity() const	EnzymaticDigestion
getSpecificityByName(const String &name)	EnzymaticDigestion	static
isValidProduct(const AASequence &protein, Size pep_pos, Size pep_length, bool methionine_cleavage=false, bool ignore_missed_cleavages=true) const	EnzymaticDigestion
isValidProduct(const String &protein, Size pep_pos, Size pep_length, bool methionine_cleavage=false, bool ignore_missed_cleavages=true) const	EnzymaticDigestion
missed_cleavages_	EnzymaticDigestion	protected
NamesOfSpecificity	EnzymaticDigestion	static
operator=(const EnzymaticDigestion &rhs)	EnzymaticDigestion
peptideCount(const AASequence &protein)	EnzymaticDigestion
setEnzyme(const String name)	EnzymaticDigestion
setMissedCleavages(Size missed_cleavages)	EnzymaticDigestion
setSpecificity(Specificity spec)	EnzymaticDigestion
SIZE_OF_SPECIFICITY enum value	EnzymaticDigestion
SPEC_FULL enum value	EnzymaticDigestion
SPEC_NONE enum value	EnzymaticDigestion
SPEC_SEMI enum value	EnzymaticDigestion
Specificity enum name	EnzymaticDigestion
specificity_	EnzymaticDigestion	protected
tokenize_(const String &protein) const	EnzymaticDigestion	protected
UnspecificCleavage	EnzymaticDigestion	static