Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

#include <OpenMS/ANALYSIS/ID/PeptideSearchEngineFIAlgorithm.h>

Collaboration diagram for PeptideSearchEngineFIAlgorithm::AnnotatedHit_:

Static Public Member Functions
static bool	hasBetterScore (const AnnotatedHit_ &a, const AnnotatedHit_ &b)

Public Attributes
AASequence	sequence

double	score = 0
	main score More...

std::vector< PeptideHit::PeakAnnotation >	fragment_annotations

double	prefix_fraction = 0
	fraction of annotated b-ions More...

double	suffix_fraction = 0
	fraction of annotated y-ions More...

double	mean_error = 0.0
	mean absolute fragment mass error More...

int	isotope_error = 0
	isotope offset used for this PSM More...

uint16_t	applied_charge = 0
	precursor charge used for this PSM More...

double	delta_mass = 0.0
	mass difference for open search (Da) More...

Detailed Description

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space.

Member Function Documentation

◆ hasBetterScore()

static bool hasBetterScore	(	const AnnotatedHit_ &	a,
		const AnnotatedHit_ &	b
	)

inlinestatic

References PeptideSearchEngineFIAlgorithm::AnnotatedHit_::score, and PeptideSearchEngineFIAlgorithm::AnnotatedHit_::sequence.

Member Data Documentation

◆ applied_charge

uint16_t applied_charge = 0

precursor charge used for this PSM

◆ delta_mass

double delta_mass = 0.0

mass difference for open search (Da)

◆ fragment_annotations

std::vector<PeptideHit::PeakAnnotation> fragment_annotations

◆ isotope_error

int isotope_error = 0

isotope offset used for this PSM

◆ mean_error

double mean_error = 0.0

mean absolute fragment mass error

◆ prefix_fraction

double prefix_fraction = 0

fraction of annotated b-ions

◆ score

double score = 0

main score

Referenced by PeptideSearchEngineFIAlgorithm::AnnotatedHit_::hasBetterScore().

◆ sequence

AASequence sequence