OpenSwathBase.h File Reference

#include <OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h>
#include <OpenMS/FORMAT/DATAACCESS/MSDataSqlConsumer.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/FORMAT/SwathFile.h>
#include <OpenMS/ANALYSIS/OPENSWATH/SwathWindowLoader.h>
#include <OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h>
#include <OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.h>
#include <OpenMS/OPENSWATHALGO/DATAACCESS/SwathMap.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMRTNormalizer.h>
#include <OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h>
#include <OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h>
#include <cassert>
#include <limits>
#include <OpenMS/APPLICATIONS/TOPPBase.h>

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Classes
class	TOPPOpenSwathBase
struct	TOPPOpenSwathBase::CalibrationResult
	Outputs of RT, m/z, IM calibration. More...

Namespaces
	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::TOPPOpenSwathBase::CalibrationResult

struct OpenMS::TOPPOpenSwathBase::CalibrationResult

Outputs of RT, m/z, IM calibration.

Collaboration diagram for TOPPOpenSwathBase::CalibrationResult:

Class Members
double	ms1_im_window	MS1 ion mobility extraction window (full width, native IM units). -1 if not computed/applicable.
double	ms1_mz_window_ppm	MS1 m/z extraction window (full width, ppm). -1 if not computed.
double	ms2_im_window	MS2 ion mobility extraction window (full width, native IM units). -1 if not computed/applicable.
double	ms2_mz_window_ppm	MS2 m/z extraction window (full width, ppm). -1 if not computed.
TransformationDescription	rt_trafo	RT normalization transformation (fitted Trafo)