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OpenMS
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#include <OpenMS/APPLICATIONS/TOPPBase.h>#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/TMTEighteenPlexQuantitationMethod.h>#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h>#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.h>#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h>#include <OpenMS/ML/NNLS/NonNegativeLeastSquaresSolver.h>#include <OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h>#include <OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h>#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>#include <OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h>#include <OpenMS/ANALYSIS/ID/PrecursorPurity.h>#include <OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h>#include <OpenMS/FORMAT/ConsensusXMLFile.h>#include <OpenMS/FORMAT/ExperimentalDesignFile.h>#include <OpenMS/FORMAT/FileHandler.h>#include <OpenMS/FORMAT/MzMLFile.h>#include <OpenMS/FORMAT/MzTabFile.h>#include <OpenMS/KERNEL/MSExperiment.h>#include <OpenMS/PROCESSING/ID/IDFilter.h>#include <string>#include <vector>#include <memory>