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OpenMS
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#include <boost/iostreams/device/null.hpp>#include <boost/iostreams/filtering_stream.hpp>#include <OpenMS/config.h>#include <OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h>#include <OpenMS/APPLICATIONS/TOPPBase.h>#include <OpenMS/DATASTRUCTURES/ListUtilsIO.h>#include <OpenMS/DATASTRUCTURES/StringListUtils.h>#include <OpenMS/FORMAT/ConsensusXMLFile.h>#include <OpenMS/FORMAT/FASTAFile.h>#include <OpenMS/FORMAT/FeatureXMLFile.h>#include <OpenMS/FORMAT/FileHandler.h>#include <OpenMS/FORMAT/FileTypes.h>#include <OpenMS/FORMAT/HANDLERS/IndexedMzMLHandler.h>#include <OpenMS/FORMAT/IdXMLFile.h>#include <OpenMS/FORMAT/MzDataFile.h>#include <OpenMS/FORMAT/MzIdentMLFile.h>#include <OpenMS/FORMAT/MzMLFile.h>#include <OpenMS/FORMAT/MzTabFile.h>#include <OpenMS/FORMAT/MzXMLFile.h>#include <OpenMS/FORMAT/PeakTypeEstimator.h>#include <OpenMS/FORMAT/PepXMLFile.h>#include <OpenMS/FORMAT/TransformationXMLFile.h>#include <OpenMS/IONMOBILITY/FAIMSHelper.h>#include <OpenMS/KERNEL/Feature.h>#include <OpenMS/KERNEL/FeatureMap.h>#include <OpenMS/KERNEL/MSExperiment.h>#include <OpenMS/MATH/MathFunctions.h>#include <OpenMS/MATH/StatisticFunctions.h>#include <OpenMS/SYSTEM/SysInfo.h>#include <unordered_map>#include <iomanip>#include <map>