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OpenMS
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#include <OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h>#include <OpenMS/APPLICATIONS/TOPPBase.h>#include <OpenMS/CHEMISTRY/ProteaseDB.h>#include <OpenMS/CHEMISTRY/ProteaseDigestion.h>#include <OpenMS/FORMAT/FASTAFile.h>#include <OpenMS/FORMAT/FileHandler.h>#include <OpenMS/METADATA/ProteinIdentification.h>#include <boost/random/mersenne_twister.hpp>#include <boost/random/uniform_int_distribution.hpp>