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- n -
n :
EmgFitter1D::Data
,
RANSACParam
n_ :
LinearRegressionWithoutIntercept
n_buffer_ :
Bzip2Ifstream
,
GzipIfstream
n_decoys_ :
ConfidenceScoring
n_detecting_l :
MRMFeatureQC::ComponentGroupQCs
n_detecting_u :
MRMFeatureQC::ComponentGroupQCs
n_external_features_ :
FeatureFinderIdentificationAlgorithm
n_external_peps_ :
FeatureFinderIdentificationAlgorithm
n_fractions :
PeptideAndProteinQuant::Statistics
n_heavy_l :
MRMFeatureQC::ComponentGroupQCs
n_heavy_u :
MRMFeatureQC::ComponentGroupQCs
n_hits_ :
XQuestResultXMLHandler
,
XQuestResultXMLFile
n_identifying_l :
MRMFeatureQC::ComponentGroupQCs
n_identifying_u :
MRMFeatureQC::ComponentGroupQCs
n_internal_features_ :
FeatureFinderIdentificationAlgorithm
n_internal_peps_ :
FeatureFinderIdentificationAlgorithm
n_isotopes_ :
FeatureFinderAlgorithmMetaboIdent
,
FeatureFinderIdentificationAlgorithm
n_light_l :
MRMFeatureQC::ComponentGroupQCs
n_light_u :
MRMFeatureQC::ComponentGroupQCs
n_ms_files :
PeptideAndProteinQuant::Statistics
n_parts_ :
SimpleSVM
n_peaks :
MorpheusScore::Result
n_points_ :
AbsoluteQuantitationMethod
n_quantifying_l :
MRMFeatureQC::ComponentGroupQCs
n_quantifying_u :
MRMFeatureQC::ComponentGroupQCs
n_samples :
PeptideAndProteinQuant::Statistics
n_shared_ :
FeatureFinderAlgorithmMetaboIdent
n_spectra_ :
SpectrumLookup
n_study_variables_ :
MzTab::CMMzTabStream
n_term_gain_ :
DigestionEnzymeProtein
n_term_mod_ :
AASequence
N_TERM_MODIFICATION_INDEX :
ModifiedPeptideGenerator
N_TERMINAL_AA :
PeptideEvidence
N_TERMINAL_POSITION :
PeptideEvidence
n_transitions_ :
ConfidenceScoring
n_transitions_l :
MRMFeatureQC::ComponentGroupQCs
n_transitions_u :
MRMFeatureQC::ComponentGroupQCs
na_string_ :
MSstatsFile
,
TriqlerFile
name :
ControlledVocabulary::CVTerm
,
CVTerm::Unit
,
DecoyHelper::Result
,
FalseDiscoveryRate::DecoyStringHelper::Result
,
IdentifiedCompound
,
InputFile
,
MzIdentMLDOMHandler::AnalysisSoftware
,
MzIdentMLDOMHandler::DatabaseInput
,
SemanticValidator::CVTerm
,
ToolDescriptionInternal
,
IsobaricQuantitationMethod::IsobaricChannelInformation
,
ItraqConstants::ChannelInfo
,
MzTabContactMetaData
,
MzTabInstrumentMetaData
,
MzTabMAssayMetaData
,
MzTabMStudyVariableMetaData
,
Param::ParamEntry
,
Param::ParamIterator::TraceInfo
,
Param::ParamNode
,
ParameterInformation
,
QcMLFile::Attachment
,
QcMLFile::QualityParameter
,
RangeStatsType
name_ :
AdductInfo
,
Contaminants
,
ControlledVocabulary
,
CVReference
,
CVTerm
,
DigestionEnzyme
,
Element
,
BaseException
,
FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound
,
FeatureSummary
,
IdentificationSummary
,
IMSElement
,
IncludeExcludeTarget
,
Instrument
,
InstrumentVisualizer
,
IdentificationHit
,
PTMXMLHandler
,
ItraqEightPlexQuantitationMethod
,
ItraqFourPlexQuantitationMethod
,
LayerDataBase
,
MetaInfoDescription
,
ModelDescription< D >
,
Ms2IdentificationRate
,
Ms2SpectrumStats
,
MSChromatogram
,
MSSpectrum
,
MzTabParameter
,
QcMLFile
,
ReactionMonitoringTransition
,
Residue
,
ResidueModification
,
Ribonucleotide
,
RTAlignment
,
Sample
,
Software
,
SpectrumCount
,
TIC
,
TMTEighteenPlexQuantitationMethod
,
TMTElevenPlexQuantitationMethod
,
TMTSixPlexQuantitationMethod
,
TMTSixteenPlexQuantitationMethod
,
TMTTenPlexQuantitationMethod
,
ToolInfo
,
TOPPASToolVertex
name_att_ :
SemanticValidator
name_of_file_ :
SourceFile
,
SourceFileVisualizer
name_suffix_ :
LayerDataBase
name_to_counter_map_ :
StreamHandler
name_to_index_ :
MetaInfoRegistry
name_to_stream_map_ :
StreamHandler
name_to_type_map_ :
StreamHandler
names_ :
ElementDB
,
QcMLFile
names_of_missing_decoy :
PeptideIndexing
names_of_modeltype :
MZTrafoModel
names_of_OriginAnnotationFormat :
IDRipper
names_of_oswlevel :
OSWFile
names_of_quantmethod :
MassTrace
names_of_requires :
QCBase
names_of_residuetype :
Residue
names_of_toleranceUnit :
QCBase
names_of_unmatched :
PeptideIndexing
NamesOfAcquisitionMode :
IonDetector
NamesOfActivationMethod :
Precursor
NamesOfActivationMethodShort :
Precursor
NamesOfAnalyzerType :
MassAnalyzer
NamesOfAnnotationState :
BaseFeature
NamesOfChecksumType :
SourceFile
NamesOfDataType :
DataValue
NamesOfDerivatizationAgent :
IsotopeLabelingMDVs
NamesOfInletType :
IonSource
NamesOfIonizationMethod :
IonSource
NamesOfIonOpticsType :
Instrument
NamesOfIsotopeVariant :
Tagging
NamesOfLabelType :
LayerDataDefs
NamesOfMassIntensityType :
IsotopeLabelingMDVs
NamesOfNumpressCompression :
MSNumpressCoder
NamesOfPeakMassType :
ProteinIdentification
NamesOfPolarity :
IonSource
NamesOfProcessingAction :
DataProcessing
NamesOfReflectronState :
MassAnalyzer
NamesOfResolutionMethod :
MassAnalyzer
NamesOfResolutionType :
MassAnalyzer
NamesOfSampleState :
Sample
NamesOfScanDirection :
MassAnalyzer
NamesOfScanLaw :
MassAnalyzer
NamesOfScanMode :
InstrumentSettings
NamesOfScoringMatrices :
NeedlemanWunsch
NamesOfSpecificity :
EnzymaticDigestion
NamesOfSpecificityType :
Modification
NamesOfSpectrumType :
SpectrumSettings
NamesOfType :
IonDetector
namesToIds_ :
ControlledVocabulary
nan_ :
SVOutStream
native_id :
SpectrumMetaDataLookup::SpectrumMetaData
native_id_ :
ChromatogramSettings
,
SpectrumSettings
,
SpectrumSettingsVisualizer
native_id_accession :
SiriusMSFile::AccessionInfo
native_id_type :
SiriusMSFile::AccessionInfo
native_id_type_ :
SourceFile
,
SourceFileVisualizer
native_id_type_accession_ :
SourceFile
native_ids :
SiriusMSFile::CompoundInfo
native_ids_id :
SiriusMSFile::CompoundInfo
native_spectrum_name_ :
PepXMLFile
nativeid_to_index_ :
QCBase::SpectraMap
near_ :
Plot3DOpenGLCanvas
nearest_neighbour_index_ :
MinimumDistance
needle_count_ :
ACTrie
needle_index :
Hit
needle_length :
Hit
needs_ :
TOPPViewMenu::ActionRequirement_
neg_ :
ROCCurve
neg_adducts_ :
AccurateMassSearchEngine
neg_adducts_fname_ :
AccurateMassSearchEngine
neg_charges_ :
Compomer
negative_iso_peaks_ :
PeakGroup
negative_mode_ :
MetaboliteFeatureDeconvolution
negative_prior_ :
PosteriorErrorProbabilityModel
neighbor_stats_ :
NeighborSeq
neighbors_ :
QTCluster::BulkData
nesting_level_ :
MzXMLHandler
net_charge_ :
Compomer
network_manager_ :
TOPPASBase
network_reply_ :
TOPPASBase
neutral_loss_average_masses_ :
ResidueModification
neutral_loss_avg_masses_ :
UnimodXMLHandler
neutral_loss_diff_formula_ :
UnimodXMLHandler
neutral_loss_diff_formulas_ :
UnimodXMLHandler
,
ResidueModification
neutral_loss_mono_masses_ :
UnimodXMLHandler
,
ResidueModification
neutral_losses_for_ions_ :
SequestInfile
new_code_ :
Ribonucleotide
new_eluent_ :
GradientVisualizer
new_node :
_Alloc_base< _Tp, _Alloc >::NoLeakAlloc
new_score_ :
IDScoreSwitcherAlgorithm
new_score_type_ :
IDScoreSwitcherAlgorithm
new_timepoint_ :
GradientVisualizer
newdescription_ :
MetaInfoVisualizer
newkey_ :
MetaInfoVisualizer
newline_ :
SVOutStream
newRowButton_ :
ListEditor
newvalue_ :
MetaInfoVisualizer
next_consumer_ :
MSDataAggregatingConsumer
next_index_ :
MetaInfoRegistry
next_v :
IDBoostGraph::dfs_ccsplit_visitor
nextrow_ :
GradientVisualizer
,
MetaInfoVisualizer
nn_threshold :
MRMFeatureSelector::SelectorParameters
no_checks_ :
IdentificationData
no_exceptions :
Summary
no_mzml_ :
MzCalibration
no_precursors :
IDMapper::SpectraIdentificationState
no_rt_error_ :
MascotXMLHandler
NoCleavage :
EnzymaticDigestion
node_offset_ :
TOPPASBase
nodes :
Param::ParamNode
nodes_ :
SimpleSVM
noID_penalty_ :
QTClusterFinder
noise_for_empty_window_ :
SignalToNoiseEstimatorMeanIterative< Container >
,
SignalToNoiseEstimatorMedian< Container >
noise_threshold_constant_ :
MetaboTargetedAssay
noise_threshold_int_ :
MassTraceDetection
noloss_regex_ :
SpectrumAnnotator
nominal_mass_ :
IMSIsotopeDistribution
norm_factor :
FeatureDistance::DistanceParams_
norm_rt_score :
OpenSwath_Scores
normalization_enabled_ :
IsobaricQuantifier
normalize_xcorr_ :
SequestInfile
normalized_experimental_rt :
OpenSwath_Scores
norms_ :
FLASHDeconvHelperStructs::PrecalculatedAveragine
note :
TransformationModel::DataPoint
np_compression :
MzMLHandlerHelper::BinaryData
,
MSNumpressCoder::NumpressConfig
np_config_fda_ :
PeakFileOptions
np_config_int_ :
PeakFileOptions
np_config_mz_ :
PeakFileOptions
nr_charges_ :
DiaPrescore
nr_children :
ACNode
nr_isotopes_ :
DiaPrescore
nr_iterations_ :
PeakPickerIterative
nr_ms1_spectra_ :
CachedSwathFileConsumer
,
MzMLSwathFileConsumer
,
SwathQC
nr_ms2_spectra_ :
CachedSwathFileConsumer
,
MzMLSwathFileConsumer
nr_partitions_ :
QTClusterFinder
nr_peaks :
OpenSwath_Scores
nr_windows :
SignalToNoiseEstimatorMedianRapid::NoiseEstimator
nrPrefractionationGroups_ :
IDBoostGraph
nt_regex_ :
SpectrumAnnotator
NTerm_loss_formulas_ :
Residue
NTerm_loss_names_ :
Residue
nucleic_acid_data_ :
MzTab
nucleic_acid_search_engine_score :
MzTabMetaData
nucleotide_reading_frame_ :
SequestInfile
num_frags_ :
SequestOutfile
num_interest :
DBSuitability::SuitabilityData
num_iso_peaks_mean :
OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_linear_alpha :
OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_linear_beta :
OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_xlinks_alpha :
OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_xlinks_beta :
OPXLDataStructs::CrossLinkSpectrumMatch
num_maps_ :
KDTreeFeatureMaps
,
QTCluster::BulkData
,
QTClusterFinder
num_ms2_spectra :
Ms2IdentificationRate::IdentificationRateData
num_oligos_distinct_ms_run :
MzTabNucleicAcidSectionRow
num_oligos_unique_ms_run :
MzTabNucleicAcidSectionRow
num_osms_ms_run :
MzTabNucleicAcidSectionRow
NUM_PARAMS_ :
EGHTraceFitter
,
GaussTraceFitter
num_peptide_identification :
Ms2IdentificationRate::IdentificationRateData
num_peptides_distinct_ms_run :
MzTabProteinSectionRow
num_peptides_unique_ms_run :
MzTabProteinSectionRow
num_psms_ms_run :
MzTabProteinSectionRow
num_re_ranked :
DBSuitability::SuitabilityData
num_top_db :
DBSuitability::SuitabilityData
num_top_novo :
DBSuitability::SuitabilityData
num_top_novo_corr :
DBSuitability::SuitabilityData
number :
FuzzyStringComparator::StreamElement_
number_ :
Sample
number_ms2_empty :
IsobaricQuantifierStatistics
number_ms2_total :
IsobaricQuantifierStatistics
number_of_datapoints :
LayerDataDefs::ProjectionData::Summary
number_of_max_aa_ :
MassDecomposition
number_of_missed_cleavages_ :
XTandemInfile
number_of_runs_ :
ConsensusIDAlgorithm
number_of_threads_ :
XTandemInfile
number_top_hits_ :
OpenPepXLAlgorithm
,
OpenPepXLLFAlgorithm
numerator_ref_ :
ConsensusFeature::Ratio
numpressErrorTolerance :
MSNumpressCoder::NumpressConfig
numpressFixedPoint :
MSNumpressCoder::NumpressConfig
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