MultiplexFilteringProfile Member List

This is the complete list of members for MultiplexFilteringProfile, including all inherited members.

averagine_similarity_	MultiplexFiltering	protected
averagine_similarity_scaling_	MultiplexFiltering	protected
averagine_type_	MultiplexFiltering	protected
blacklist_	MultiplexFiltering	protected
blacklistPeak_(const MultiplexFilteredPeak &peak)	MultiplexFiltering	protected
blacklistPeak_(const MultiplexFilteredPeak &peak, unsigned pattern_idx)	MultiplexFiltering	protected
boundaries_	MultiplexFilteringProfile	private
checkForSignificantPeak_(double mz, double mz_tolerance, MSExperiment::ConstIterator &it_rt, double intensity_first_peak) const	MultiplexFiltering	protected
CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
exp_centroided_	MultiplexFiltering	protected
exp_centroided_mapping_	MultiplexFiltering	protected
exp_centroided_white_	MultiplexFiltering	protected
exp_spline_profile_	MultiplexFilteringProfile	private
filter()	MultiplexFilteringProfile
filterAveragineModel_(const MultiplexIsotopicPeakPattern &pattern, const MultiplexFilteredPeak &peak, const std::multimap< size_t, MultiplexSatelliteProfile > &satellites_profile) const	MultiplexFilteringProfile	private
OpenMS::MultiplexFiltering::filterAveragineModel_(const MultiplexIsotopicPeakPattern &pattern, const MultiplexFilteredPeak &peak) const	MultiplexFiltering	protected
filterPeakPositions_(double mz, const MSExperiment::ConstIterator &it_rt_begin, const MSExperiment::ConstIterator &it_rt_band_begin, const MSExperiment::ConstIterator &it_rt_band_end, const MultiplexIsotopicPeakPattern &pattern, MultiplexFilteredPeak &peak) const	MultiplexFiltering	protected
filterPeptideCorrelation_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteProfile > &satellites_profile) const	MultiplexFilteringProfile	private
OpenMS::MultiplexFiltering::filterPeptideCorrelation_(const MultiplexIsotopicPeakPattern &pattern, const MultiplexFilteredPeak &peak) const	MultiplexFiltering	protected
getBlacklist()	MultiplexFiltering
getCentroidedExperiment()	MultiplexFiltering
getLogType() const	ProgressLogger
getPeakBoundaries()	MultiplexFilteringProfile
GUI enum value	ProgressLogger
intensity_cutoff_	MultiplexFiltering	protected
isotopes_per_peptide_max_	MultiplexFiltering	protected
isotopes_per_peptide_min_	MultiplexFiltering	protected
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
MultiplexFiltering(const MSExperiment &exp_centroided, const std::vector< MultiplexIsotopicPeakPattern > &patterns, int isotopes_per_peptide_min, int isotopes_per_peptide_max, double intensity_cutoff, double rt_band, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling, String averagine_type="peptide")	MultiplexFiltering
MultiplexFilteringProfile(MSExperiment &exp_profile, const MSExperiment &exp_centroided, const std::vector< std::vector< PeakPickerHiRes::PeakBoundary > > &boundaries, const std::vector< MultiplexIsotopicPeakPattern > &patterns, int isotopes_per_peptide_min, int isotopes_per_peptide_max, double intensity_cutoff, double rt_band, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling, String averagine_type="peptide")	MultiplexFilteringProfile
mz_tolerance_	MultiplexFiltering	protected
mz_tolerance_unit_in_ppm_	MultiplexFiltering	protected
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const ProgressLogger &other)	ProgressLogger
patterns_	MultiplexFiltering	protected
peptide_similarity_	MultiplexFiltering	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
rt_band_	MultiplexFiltering	protected
setLogger(ProgressLoggerImpl *logger)	ProgressLogger
setLogType(LogType type) const	ProgressLogger
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
type_	ProgressLogger	mutableprotected
updateWhiteMSExperiment_()	MultiplexFiltering	protected
White2Original typedef	MultiplexFiltering
~ProgressLogger()	ProgressLogger	virtual