Converts .oms (SQLite) files to JSON

potential predecessor tools	→ JSONExporter →	potential successor tools
IDFileConverter	→ JSONExporter →	external tools

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The command line parameters of this tool are:

stty: 'standard input': Inappropriate ioctl for device

JSONExporter -- Exports .oms (SQLite) files in JSON format
Full documentation: http://www.openms.de/doxygen/nightly/html/TOPP_JSONExporter.html
Version: 3.4.0-pre-HEAD-2025-01-17 Jan 27 2025, 12:59:34, Revision: 483d1ee
To cite OpenMS:
 + Pfeuffer, J., Bielow, C., Wein, S. et al.. OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nat Methods (2024). doi:10.1038/s41592-024-02197-7.

Usage:
  JSONExporter <options>

Options (mandatory options marked with '*'):
  -in <file>*        Input file (valid formats: 'oms')
  -out <file>*       Output file (valid formats: 'json')
                     
Common TOPP options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+JSONExporterExports .oms (SQLite) files in JSON format

version3.4.0-pre-HEAD-2025-01-17 Version of the tool that generated this parameters file.

++1Instance '1' section for 'JSONExporter'

in Input fileinput file*.oms

out Output fileoutput file*.json

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue, false

forcefalse Overrides tool-specific checkstrue, false

testfalse Enables the test mode (needed for internal use only)true, false