Converts .oms (SQLite) files to JSON

potential predecessor tools	→ JSONExporter →	potential successor tools
IDFileConverter	→ JSONExporter →	external tools

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The command line parameters of this tool are:

JSONExporter -- Exports .oms (SQLite) files in JSON format
Full documentation: http://www.openms.de/doxygen/release/3.1.0/html/TOPP_JSONExporter.html
Version: 3.1.0 Oct 18 2023, 10:27:18, Revision: 17a07f8
To cite OpenMS:
 + Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for 
   mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

Usage:
  JSONExporter <options>

Options (mandatory options marked with '*'):
  -in <file>*        Input file (valid formats: 'oms')
  -out <file>*       Output file (valid formats: 'json')
                     
Common TOPP options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+JSONExporterExports .oms (SQLite) files in JSON format

version3.1.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'JSONExporter'

in Input fileinput file*.oms

out Output fileoutput file*.json

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue, false

forcefalse Overrides tool-specific checkstrue, false

testfalse Enables the test mode (needed for internal use only)true, false