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OpenMS
2.5.0
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OpenMS
2.5.0
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This is the complete list of members for MzTab, including all inherited members.
| addMetaInfoToOptionalColumns(const std::set< String > &keys, std::vector< MzTabOptionalColumnEntry > &opt, const String &id, const MetaInfoInterface &meta) | MzTab | static |
| addPepEvidenceToRows(const std::vector< PeptideEvidence > &peptide_evidences, MzTabPSMSectionRow &row, MzTabPSMSectionRows &rows) | MzTab | static |
| checkSequenceUniqueness_(const std::vector< PeptideIdentification > &curr_pep_ids) | MzTab | protectedstatic |
| comment_rows_ | MzTab | protected |
| empty_rows_ | MzTab | protected |
| exportConsensusMapToMzTab(const ConsensusMap &consensus_map, const String &filename, const bool first_run_inference_only, const bool export_unidentified_features, const bool export_unassigned_ids, const bool export_subfeatures, const bool export_empty_pep_ids=false, const String &title="ConsensusMap export from OpenMS") | MzTab | static |
| exportFeatureMapToMzTab(const FeatureMap &feature_map, const String &filename) | MzTab | static |
| exportIdentificationsToMzTab(const std::vector< ProteinIdentification > &prot_ids, const std::vector< PeptideIdentification > &peptide_ids, const String &filename, bool first_run_inference_only, std::map< std::pair< size_t, size_t >, size_t > &map_run_fileidx_2_msfileidx, std::map< String, size_t > &idrun_2_run_index, bool export_empty_pep_ids=false) | MzTab | static |
| extractModificationListFromAASequence(const AASequence &aas, const std::vector< String > &fixed_mods=std::vector< String >()) | MzTab | static |
| generateMzTabStringFromFixedModifications(const std::vector< String > &mods) | MzTab | static |
| generateMzTabStringFromModifications(const std::vector< String > &mods) | MzTab | static |
| generateMzTabStringFromVariableModifications(const std::vector< String > &mods) | MzTab | static |
| getCommentRows() const | MzTab | |
| getEmptyRows() const | MzTab | |
| getMetaData() const | MzTab | |
| getNucleicAcidOptionalColumnNames() const | MzTab | |
| getNucleicAcidSectionRows() const | MzTab | |
| getOligonucleotideOptionalColumnNames() const | MzTab | |
| getOligonucleotideSectionRows() const | MzTab | |
| getOptionalColumnNames_(const SectionRows &rows) const | MzTab | inlineprotected |
| getOSMOptionalColumnNames() const | MzTab | |
| getOSMSectionRows() const | MzTab | |
| getPeptideOptionalColumnNames() const | MzTab | |
| getPeptideSectionRows() const | MzTab | |
| getProteinOptionalColumnNames() const | MzTab | |
| getProteinSectionRows() const | MzTab | |
| getPSMOptionalColumnNames() const | MzTab | |
| getPSMSectionRows() const | MzTab | |
| getSmallMoleculeOptionalColumnNames() const | MzTab | |
| getSmallMoleculeSectionRows() const | MzTab | |
| meta_data_ | MzTab | protected |
| MzTab() | MzTab | |
| nucleic_acid_data_ | MzTab | protected |
| oligonucleotide_data_ | MzTab | protected |
| osm_data_ | MzTab | protected |
| peptide_data_ | MzTab | protected |
| protein_data_ | MzTab | protected |
| psm_data_ | MzTab | protected |
| setCommentRows(const std::map< Size, String > &com) | MzTab | |
| setEmptyRows(const std::vector< Size > &empty) | MzTab | |
| setMetaData(const MzTabMetaData &md) | MzTab | |
| setNucleicAcidSectionRows(const MzTabNucleicAcidSectionRows &nasd) | MzTab | |
| setOligonucleotideSectionRows(const MzTabOligonucleotideSectionRows &onsd) | MzTab | |
| setOSMSectionRows(const MzTabOSMSectionRows &osd) | MzTab | |
| setPeptideSectionRows(const MzTabPeptideSectionRows &psd) | MzTab | |
| setProteinSectionRows(const MzTabProteinSectionRows &psd) | MzTab | |
| setPSMSectionRows(const MzTabPSMSectionRows &psd) | MzTab | |
| setSmallMoleculeSectionRows(const MzTabSmallMoleculeSectionRows &smsd) | MzTab | |
| small_molecule_data_ | MzTab | protected |
| ~MzTab() | MzTab | virtual |
1.8.16