ConfidenceScoring Member List

This is the complete list of members for ConfidenceScoring, including all inherited members.

BimapType typedef	ConfidenceScoring	protected
chooseDecoys_()	ConfidenceScoring	protected
CMD enum value	ProgressLogger
ConfidenceScoring(bool test_mode_=false)	ConfidenceScoring	inlineexplicit
current_logger_	ProgressLogger	mutableprotected
decoy_index_	ConfidenceScoring	protected
endProgress() const	ProgressLogger
extractIntensities_(BimapType &intensity_map, Size n_transitions, DoubleList &intensities)	ConfidenceScoring	protected
generator_	ConfidenceScoring	protected
getAssayRT_(const TargetedExperiment::Peptide &assay)	ConfidenceScoring	protected
getLogType() const	ProgressLogger
glm_	ConfidenceScoring	protected
GUI enum value	ProgressLogger
initialize(const TargetedExperiment &library, const Size n_decoys, const Size n_transitions, const TransformationDescription &rt_trafo)	ConfidenceScoring	inline
initializeGlm(double intercept, double rt_coef, double int_coef)	ConfidenceScoring	inline
last_invoke_	ProgressLogger	mutableprotected
library_	ConfidenceScoring	protected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
manhattanDist_(DoubleList x, DoubleList y)	ConfidenceScoring	protected
n_decoys_	ConfidenceScoring	protected
n_transitions_	ConfidenceScoring	protected
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const ProgressLogger &other)	ProgressLogger
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
rand_gen_	ConfidenceScoring	protected
recursion_depth_	ProgressLogger	protectedstatic
rt_norm_	ConfidenceScoring	protected
rt_trafo_	ConfidenceScoring	protected
scoreAssay_(const TargetedExperiment::Peptide &assay, double feature_rt, DoubleList &feature_intensities, const std::set< String > &transition_ids=std::set< String >())	ConfidenceScoring	protected
scoreFeature_(Feature &feature)	ConfidenceScoring	protected
scoreMap(FeatureMap &features)	ConfidenceScoring	inline
setLogType(LogType type) const	ProgressLogger
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
transition_map_	ConfidenceScoring	protected
type_	ProgressLogger	mutableprotected
~ConfidenceScoring()	ConfidenceScoring	inlinevirtual
~ProgressLogger()	ProgressLogger