This is the complete list of members for FalseDiscoveryRate, including all inherited members.

apply(std::vector< PeptideIdentification > &fwd_ids, std::vector< PeptideIdentification > &rev_ids) const	FalseDiscoveryRate
apply(std::vector< PeptideIdentification > &id) const	FalseDiscoveryRate
apply(std::vector< ProteinIdentification > &fwd_ids, std::vector< ProteinIdentification > &rev_ids) const	FalseDiscoveryRate
apply(std::vector< ProteinIdentification > &ids) const	FalseDiscoveryRate
applyBasic(std::vector< PeptideIdentification > &ids)	FalseDiscoveryRate
applyBasic(ConsensusMap &cmap, bool use_unassigned_peptides=true)	FalseDiscoveryRate
applyBasic(ProteinIdentification &id, bool groups_too=true)	FalseDiscoveryRate
applyEstimated(std::vector< ProteinIdentification > &ids) const	FalseDiscoveryRate
applyEvaluateProteinIDs(const std::vector< ProteinIdentification > &ids, double pepCutoff=1.0, UInt fpCutoff=50, double diffWeight=0.2)	FalseDiscoveryRate
applyEvaluateProteinIDs(const ProteinIdentification &ids, double pepCutoff=1.0, UInt fpCutoff=50, double diffWeight=0.2)	FalseDiscoveryRate
applyToQueryMatches(IdentificationData &id_data, IdentificationData::ScoreTypeRef score_ref) const	FalseDiscoveryRate
calculateEstimatedQVal_(std::map< double, double > &scores_to_FDR, ScoreToTgtDecLabelPairs &scores_labels, bool higher_score_better) const	FalseDiscoveryRate	private
calculateFDRBasic_(std::map< double, double > &scores_to_FDR, ScoreToTgtDecLabelPairs &scores_labels, bool qvalue, bool higher_score_better) const	FalseDiscoveryRate	private
calculateFDRs_(std::map< double, double > &score_to_fdr, std::vector< double > &target_scores, std::vector< double > &decoy_scores, bool q_value, bool higher_score_better) const	FalseDiscoveryRate	private
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
diffEstimatedEmpirical_(const ScoreToTgtDecLabelPairs &scores_labels, double pepCutoff=1.0) const	FalseDiscoveryRate	private
error_name_	DefaultParamHandler	protected
FalseDiscoveryRate()	FalseDiscoveryRate
FalseDiscoveryRate(const FalseDiscoveryRate &)	FalseDiscoveryRate	private
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
handleQueryMatch_(IdentificationData::QueryMatchRef match_ref, IdentificationData::ScoreTypeRef score_ref, std::vector< double > &target_scores, std::vector< double > &decoy_scores, std::map< IdentificationData::IdentifiedMoleculeRef, bool > &molecule_to_decoy, std::map< IdentificationData::QueryMatchRef, double > &match_to_score) const	FalseDiscoveryRate	private
operator=(const FalseDiscoveryRate &)	FalseDiscoveryRate	private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
rocN(const std::vector< PeptideIdentification > &ids, Size fp_cutoff) const	FalseDiscoveryRate
rocN(const std::vector< PeptideIdentification > &ids, Size fp_cutoff, const String &identifier) const	FalseDiscoveryRate
rocN(const ConsensusMap &ids, Size fp_cutoff) const	FalseDiscoveryRate
rocN(const ConsensusMap &ids, Size fp_cutoff, const String &identifier) const	FalseDiscoveryRate
rocN_(const ScoreToTgtDecLabelPairs &scores_labels, Size fpCutoff=50) const	FalseDiscoveryRate	private
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	protected
trapezoidal_area(double x1, double x2, double y1, double y2) const	FalseDiscoveryRate	private
trapezoidal_area_xEqy(double exp1, double exp2, double act1, double act2) const	FalseDiscoveryRate	private
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
~DefaultParamHandler()	DefaultParamHandler	virtual