ProteinResolver.h File Reference

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/ProteinIdentification.h>

Go to the source code of this file.

Classes
class	ProteinResolver
	Helper class for peptide and protein quantification based on feature data annotated with IDs. More...
struct	ProteinResolver::ProteinEntry
	represents a protein from FASTA file More...
struct	ProteinResolver::PeptideEntry
	represents a peptide. First in silico. If experimental is set to true it is MS/MS derived. More...
struct	ProteinResolver::MSDGroup
	representation of an msd group. Contains peptides, proteins and a pointer to its ISD group More...
struct	ProteinResolver::ISDGroup
struct	ProteinResolver::ResolverResult

Namespaces
	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::ProteinResolver::PeptideEntry

struct OpenMS::ProteinResolver::PeptideEntry

represents a peptide. First in silico. If experimental is set to true it is MS/MS derived.

Class Members
bool	experimental
Size	index
float	intensity
Size	isd_group
Size	msd_group
String	origin
Size	peptide_hit
Size	peptide_identification
list< ProteinEntry * >	proteins
String	sequence
bool	traversed

OpenMS::ProteinResolver::MSDGroup

struct OpenMS::ProteinResolver::MSDGroup

representation of an msd group. Contains peptides, proteins and a pointer to its ISD group

Class Members
Size	index
float	intensity	intensity of the MSD Group. Defined as the median of the peptide intensities.
ISDGroup *	isd_group
Size	number_of_decoy
Size	number_of_target
Size	number_of_target_plus_decoy
list< PeptideEntry * >	peptides
list< ProteinEntry * >	proteins

OpenMS::ProteinResolver::ISDGroup

struct OpenMS::ProteinResolver::ISDGroup

Class Members
Size	index
list< Size >	msd_groups
list< PeptideEntry * >	peptides
list< ProteinEntry * >	proteins