#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <QtCore/QProcess>
#include <iostream>
#include <OpenMS/FORMAT/MzDataFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/SYSTEM/File.h>
#include <QDir>
#include <sstream>