BaseSuperimposer.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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//    may be used to endorse or promote products derived from this software
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// $Maintainer: Timo Sachsenberg $
// $Authors: Clemens Groepl, Marc Sturm $
// --------------------------------------------------------------------------


#pragma once

#include <OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/KERNEL/ConsensusMap.h>

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>

#include <utility>
#include <fstream>

namespace OpenMS
{
  class OPENMS_DLLAPI BaseSuperimposer :
    public DefaultParamHandler,
    public ProgressLogger
  {

public:

    BaseSuperimposer();

    ~BaseSuperimposer() override;

    virtual void run(const ConsensusMap& map_model, const ConsensusMap& map_scene, TransformationDescription& transformation) = 0;

    static void registerChildren();

private:

    BaseSuperimposer(const BaseSuperimposer&);

    BaseSuperimposer& operator=(const BaseSuperimposer&);

  };

} // namespace OpenMS