BaseGroupFinder.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Clemens Groepl, Marc Sturm $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>

#include <utility>
#include <fstream>

namespace OpenMS
{

  class OPENMS_DLLAPI BaseGroupFinder :
    public DefaultParamHandler,
    public ProgressLogger
  {
public:
    BaseGroupFinder();

    ~BaseGroupFinder() override;

    virtual void run(const std::vector<ConsensusMap> & input, ConsensusMap & result) = 0;

    static void registerChildren();

protected:

    void checkIds_(const std::vector<ConsensusMap> & maps) const;

private:

    BaseGroupFinder(const BaseGroupFinder &);

    BaseGroupFinder & operator=(const BaseGroupFinder &);

  };

} // namespace OpenMS