PeptideSearchEngineFIAlgorithm Member List

This is the complete list of members for PeptideSearchEngineFIAlgorithm, including all inherited members.

annotate_psm_	PeptideSearchEngineFIAlgorithm	protected
check_defaults_	DefaultParamHandler	protected
CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
decoys_	PeptideSearchEngineFIAlgorithm	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
enzyme_	PeptideSearchEngineFIAlgorithm	protected
error_name_	DefaultParamHandler	protected
ExitCodes enum name	PeptideSearchEngineFIAlgorithm
fragment_mass_tolerance_	PeptideSearchEngineFIAlgorithm	protected
fragment_mass_tolerance_unit_	PeptideSearchEngineFIAlgorithm	protected
getDefaults() const	DefaultParamHandler
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
GUI enum value	ProgressLogger
isOpenSearchMode_() const	PeptideSearchEngineFIAlgorithm	inlineprotected
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
modifications_fixed_	PeptideSearchEngineFIAlgorithm	protected
modifications_max_variable_mods_per_peptide_	PeptideSearchEngineFIAlgorithm	protected
modifications_variable_	PeptideSearchEngineFIAlgorithm	protected
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
peptide_max_size_	PeptideSearchEngineFIAlgorithm	protected
peptide_min_size_	PeptideSearchEngineFIAlgorithm	protected
peptide_missed_cleavages_	PeptideSearchEngineFIAlgorithm	protected
peptide_motif_	PeptideSearchEngineFIAlgorithm	protected
PeptideSearchEngineFIAlgorithm()	PeptideSearchEngineFIAlgorithm
postProcessHits_(const PeakMap &exp, std::vector< std::vector< PeptideSearchEngineFIAlgorithm::AnnotatedHit_ > > &annotated_hits, std::vector< ProteinIdentification > &protein_ids, PeptideIdentificationList &peptide_ids, Size top_hits, const StringList &modifications_fixed, const StringList &modifications_variable, Int peptide_missed_cleavages, double precursor_mass_tolerance, double fragment_mass_tolerance, const String &precursor_mass_tolerance_unit_ppm, const String &fragment_mass_tolerance_unit_ppm, const Int precursor_min_charge, const Int precursor_max_charge, const String &enzyme, const String &database_name) const	PeptideSearchEngineFIAlgorithm	protected
precursor_isotopes_	PeptideSearchEngineFIAlgorithm	protected
precursor_mass_tolerance_	PeptideSearchEngineFIAlgorithm	protected
precursor_mass_tolerance_unit_	PeptideSearchEngineFIAlgorithm	protected
precursor_max_charge_	PeptideSearchEngineFIAlgorithm	protected
precursor_min_charge_	PeptideSearchEngineFIAlgorithm	protected
preprocessSpectra_(PeakMap &exp, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm)	PeptideSearchEngineFIAlgorithm	protectedstatic
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
report_top_hits_	PeptideSearchEngineFIAlgorithm	protected
search(const String &in_mzML, const String &in_db, std::vector< ProteinIdentification > &prot_ids, PeptideIdentificationList &pep_ids) const	PeptideSearchEngineFIAlgorithm
setLogger(ProgressLoggerImpl *logger)	ProgressLogger
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
type_	ProgressLogger	mutableprotected
updateMembers_() override	PeptideSearchEngineFIAlgorithm	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProgressLogger()	ProgressLogger	virtual