MapAlignmentAlgorithmIdentification Member List

This is the complete list of members for MapAlignmentAlgorithmIdentification, including all inherited members.

align(const std::vector< DataType > &data, std::vector< TransformationDescription > &transformations, Int reference_index=-1)	MapAlignmentAlgorithmIdentification	inline
better_	MapAlignmentAlgorithmIdentification	protected
check_defaults_	DefaultParamHandler	protected
checkParameters_(const Size runs)	MapAlignmentAlgorithmIdentification	protected
CMD enum value	ProgressLogger
computeMedians_(SeqToList &rt_data, SeqToValue &medians, bool sorted=false)	MapAlignmentAlgorithmIdentification	protected
computeTransformations_(std::vector< SeqToList > &rt_data, std::vector< TransformationDescription > &transforms, bool sorted=false)	MapAlignmentAlgorithmIdentification	protected
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
error_name_	DefaultParamHandler	protected
getBestScoringHit(const std::vector< PeptideHit > &hits, const bool is_higher_score_better)	MapAlignmentAlgorithmIdentification	protected
getDefaults() const	DefaultParamHandler
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getReference_()	MapAlignmentAlgorithmIdentification	protected
getRetentionTimes_(const std::vector< PeptideIdentification > &peptides, SeqToList &rt_data)	MapAlignmentAlgorithmIdentification	protected
getRetentionTimes_(const IdentificationData &id_data, SeqToList &rt_data)	MapAlignmentAlgorithmIdentification	protected
getRetentionTimes_(const AnnotatedMSRun &experiment, SeqToList &rt_data)	MapAlignmentAlgorithmIdentification	protected
getRetentionTimes_(const IsFCMap auto &features, SeqToList &rt_data)	MapAlignmentAlgorithmIdentification	inlineprotected
getSubsections() const	DefaultParamHandler
GUI enum value	ProgressLogger
handleIdDataScoreType_(const IdentificationData &id_data)	MapAlignmentAlgorithmIdentification	protected
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
MapAlignmentAlgorithmIdentification()	MapAlignmentAlgorithmIdentification
MapAlignmentAlgorithmIdentification(const MapAlignmentAlgorithmIdentification &)	MapAlignmentAlgorithmIdentification	private
min_run_occur_	MapAlignmentAlgorithmIdentification	protected
min_score_	MapAlignmentAlgorithmIdentification	protected
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const MapAlignmentAlgorithmIdentification &)	MapAlignmentAlgorithmIdentification	private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
reference_	MapAlignmentAlgorithmIdentification	protected
reference_index_	MapAlignmentAlgorithmIdentification	protected
score_cutoff_	MapAlignmentAlgorithmIdentification	protected
score_type_	MapAlignmentAlgorithmIdentification	protected
SeqToList typedef	MapAlignmentAlgorithmIdentification	protected
SeqToValue typedef	MapAlignmentAlgorithmIdentification	protected
setLogger(ProgressLoggerImpl *logger)	ProgressLogger
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
setReference(const DataType &data)	MapAlignmentAlgorithmIdentification	inline
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
type_	ProgressLogger	mutableprotected
updateMembers_()	DefaultParamHandler	protectedvirtual
use_adducts_	MapAlignmentAlgorithmIdentification	protected
use_feature_rt_	MapAlignmentAlgorithmIdentification	protected
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~MapAlignmentAlgorithmIdentification() override	MapAlignmentAlgorithmIdentification
~ProgressLogger()	ProgressLogger	virtual