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OpenMS
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This is the complete list of members for ACTrie, including all inherited members.
ACTrie(uint32_t max_aaa=0, uint32_t max_mm=0) | ACTrie | |
add_(const Index from, const AA edge) | ACTrie | private |
addHits_(Index i, const size_t text_pos, std::vector< Hit > &hits) const | ACTrie | private |
addHitsScout_(Index i, const ACScout &scout, const size_t text_pos, std::vector< Hit > &hits, const int current_scout_depths) const | ACTrie | private |
addNeedle(const std::string &needle) | ACTrie | |
addNeedles(const std::vector< std::string > &needles) | ACTrie | |
addNeedlesAndCompress(const std::vector< std::string > &needles) | ACTrie | |
compressTrie() | ACTrie | |
createMMScouts_(const Index i, const AA except_fromAA, const AA except_toAA, const AA except_edge, ACTrieState &state, const uint32_t aaa_left, const uint32_t mm_left) const | ACTrie | private |
createMMSubScouts_(const ACScout &prototype, const AA except_fromAA, const AA except_toAA, const AA except_edge, ACTrieState &state) const | ACTrie | private |
createScouts_(const Index i, const AA fromAA, const AA toAA, ACTrieState &state, const uint32_t aaa_left, const uint32_t mm_left) const | ACTrie | private |
createSubScouts_(const ACScout &prototype, const AA fromAA, const AA toAA, ACTrieState &state) const | ACTrie | private |
findChildBFS_(const Index parent, const AA child_label) const | ACTrie | private |
findChildNaive_(Index parent, AA child_label) | ACTrie | private |
follow_(const Index i, const AA edge) const | ACTrie | private |
followScout_(ACScout &scout, const AA edge, ACTrieState &state) const | ACTrie | private |
getAllHits(ACTrieState &state) const | ACTrie | |
getMaxAAACount() const | ACTrie | |
getMaxMMCount() const | ACTrie | |
getNeedleCount() const | ACTrie | |
max_aaa_ | ACTrie | private |
max_mm_ | ACTrie | private |
needle_count_ | ACTrie | private |
nextHits(ACTrieState &state) const | ACTrie | |
nextHitsNoClear_(ACTrieState &state) const | ACTrie | private |
setMaxAAACount(const uint32_t max_aaa) | ACTrie | |
setMaxMMCount(const uint32_t max_mm) | ACTrie | |
size() const | ACTrie | inline |
stepPrimary_(const Index i, const AA edge, ACTrieState &state) const | ACTrie | private |
stepScout_(ACScout &scout, ACTrieState &state) const | ACTrie | private |
trie_ | ACTrie | private |
vec_index2children_naive_ | ACTrie | private |
vec_index2needles_ | ACTrie | private |
~ACTrie() | ACTrie |