39 float fdr_threshold = -1.0;
44 UInt peptide_spectrum_matches = 0;
47 float missed_cleavages_mean = 0;
48 double protein_hit_scores_mean = 0;
49 double peptide_length_mean = 0;
75 const String name_ =
"Summary of detected Proteins and Peptides from idXML file";
Stores and handles combinations of enum values, e.g. a set of flags as bits flipped in an UInt64.
Definition: FlagSet.h:28
Definition: IdentificationSummary.h:27
IdentificationSummary()=default
Constructor.
const String & getName() const override
Returns the name of the metric.
virtual ~IdentificationSummary()=default
Destructor.
QCBase::Status requirements() const override
Returns the input data requirements of the compute(...) function.
Result compute(std::vector< ProteinIdentification > &prot_ids, PeptideIdentificationList &pep_ids)
computes a summary of an idXML file
Definition: IdentificationSummary.h:37
Container for peptide identifications from multiple spectra.
Definition: PeptideIdentificationList.h:66
This class serves as an abstract base class for all QC classes.
Definition: QCBase.h:29
A more convenient string class.
Definition: String.h:34
unsigned int UInt
Unsigned integer type.
Definition: Types.h:64
Main OpenMS namespace.
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:19
Definition: IdentificationSummary.h:43
UniqueID unique_peptides
Definition: IdentificationSummary.h:45
bool operator==(const Result &rhs) const
UniqueID unique_proteins
Definition: IdentificationSummary.h:46